KEGG   Gossypium raimondii: 11538547
Entry
11538547          CDS       T04129                                 
Symbol
rpoC1, A6772_cp012
Name
(RefSeq) RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gra  Gossypium raimondii
Pathway
gra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    11538547 (rpoC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    11538547 (rpoC1)
   03400 DNA repair and recombination proteins [BR:gra03400]
    11538547 (rpoC1)
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     11538547 (rpoC1)
Transcription machinery [BR:gra03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     11538547 (rpoC1)
DNA repair and recombination proteins [BR:gra03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      11538547 (rpoC1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 11538547
NCBI-ProteinID: YP_005087684
UniProt: H2B926
Position
Pltd:complement(21526..24351)
AA seq 685 aa
MIDRYKHQQLRIGSVSPQQISAWAKKILPNGETVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIRRYQMGYIRLACPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDVSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFT
TQGFDTFRSREISTGAGAIREQLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRR
KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
PNIGVAKSKIREKGPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGNRRGICANRYNPWNRKSYQNERIDDNNYKSTREPFFCNSYDAIGAYRQKRINLDS
PLWLRWRLEQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSLKKKILCIYIRTTVGHIS
LYREIEEAIQGFFRAYSYDTQSYGI
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgatcgaccgatataaacatcaacaactccgaattggatcagtttctccccaacaaata
agtgcttgggccaagaaaatcctacctaatggagaaaccgttggagaggtgacaaaaccc
tatacttttcattacaaaaccaataaaccggaaaaggatggattattttgtgaaagaatt
tttggacctataaaaagtggaatttgcgcttgtggaaattatcgagtaattggaaatcaa
aaggagggccctaaattttgtgaacaatgcggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaggctggcatgtccagtaactcatgtatggtatttgaaa
cgtcttcctagttatatcgccaatcttttagacaaacctcttaaagaattagagggtcta
gtatactgcgatgtttcttttgctaggcccatcgctaaaaaacctactttcttacgatta
cgaggttcattcgaatatgaaattcaatcctggaaatacagtatcccacttttttttact
acccaaggtttcgatacatttcgaagtcgcgaaatttctaccggagcaggtgctattcga
gaacaattagccgatctagatttgcgaattcttatcgattattcggtggtagaatggaaa
gaattaggagaagaaggcctcacgggtaatgaatgggaagatcgaaaaattggaagaaga
aaggattttttggttagacgcatggaattggctaagcattttattcgaacaaatatagaa
ccagaatggatggttttatgtctattaccggttcttcctcccgagttgagaccgatcatt
cagatagatgggggtaaactaatgagttcggatattaatgaactctatagaagagttatc
tatcgaaataatactcttaccgatctattaacaacaagtagatctacgccaggggaatta
gtaatgtgtcaggaaaaattagtacaagaagccgtggatacacttcttgataatggaatc
cgcggacaaccaatgagggacggtcataataaggtttacaagtcgttttcagatgtaatt
gaaggcaaagagggaagatttcgcgagactttgcttggcaaacgagtcgattattcggga
cgttctgtcattgttgttggcccctcactttcattacatcgctgtggattgcctcgcgaa
atagcaatagagcttttccagacatttgtaattcgcggtctaattagacaacatcttgct
ccgaacataggagttgctaagagtaaaattcgggaaaaagggccgattgtatgggaaata
ctgcaagaagttatgcggggacatcctgtattgctgaatagagcgcctactctgcataga
ttaggtatacaggcattccaacctattttagtggaaggacgcgctatttgtttacatcca
ttagtttgtaagggattcaatgcagactttgatggggatcaaatggcagttcatgtacct
ttatctttagaggcgcaagcggaggctcgtttacttatgttttctcatatgaatctcttg
tctccagctattggggatcccatttccgtaccgactcaagatatgcttattgggctctat
gtattaacgagtgggaatcgtcgaggtatttgtgcgaataggtataatccatggaatcga
aaaagctatcaaaatgaaagaattgacgataataactataagtctacaagggagcctttt
ttttgtaattcctatgatgcgattggagcttataggcagaaaagaatcaatttagatagt
cctttgtggctccggtggcgactagagcaatgcgttattgcttcaagagaagctcccatc
gaagttcactatgaatctttgggtacctatcatgagatttatggacattatctaatagta
agaagtttaaaaaaaaaaattctttgtatatacattcgaaccactgttggtcatatttct
ctttaccgagaaatcgaagaagctatacaagggttttttcgggcctactcatatgatacc
caatcatatggtatctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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