KEGG   Geoalkalibacter subterraneus: GSUB_15650
Entry
GSUB_15650        CDS       T03585                                 
Name
(GenBank) helicase
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
gsb  Geoalkalibacter subterraneus
Pathway
gsb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gsb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GSUB_15650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gsb03400]
    GSUB_15650
Enzymes [BR:gsb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GSUB_15650
DNA repair and recombination proteins [BR:gsb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      GSUB_15650
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII MFD_D3 RecG_dom3_C AAA_22 UB2H
Other DBs
NCBI-ProteinID: AJF08092
UniProt: A0A0B5FIR8
Position
3326684..3330121
AA seq 1145 aa
MLQQVREGARRIEIQGLTGSCDAFLLAALLRETTEPLYILTPDESSAERLAGDLAFYWEQ
PEQICLFPQWEVTPFEPLSPHPEVEARRIATLAAMLDGSARAVILPVRAAMQRVIPRTIL
QDLSLSLKVEDEYERSPLLHRLHELGYQSVPLVEDRGTFAVRGDIIDVFPPTHDMPLRLE
FFGDFIERIRPFDPADQRSREEEIKEFTLLPAREMVLAGSHWDRFTRRFKERCDALDLPR
PQREQRLEALREGLLAPGSHFLLPLNYEGLDTFFDYAGTGRWTIVEPARLEQESDSFAAE
TLNGEQRAIDKGEPYGSCRELYLSSSELEAHLSRAPSRLDLVALQVYRLEDERPSLHFDV
QGNGDLRAALKAEGGTLPPLVERLRQWRNEGWRVLLVCHQRGQAERLQDLLEPHGASPPF
DPDARFGEARKGQALLVLGDLSAGFRLPDERLAVITEEDIFGVRTRRRGRAGAKARAMLS
SLAEIKEGDFIVHTDHGVGIYRGLRHLALGDVEGDFMHLEYAGGDKLYLPVDRIEKVQKY
VASEGHAPRLDKMGGQGWEKAKLRARAAAEELARELLKIYAQREMASAFSFSPPDRMYRE
FEAAFPYEETPDQAQAIEEVLADMQNERPMDRIVCGDVGYGKTEVAIRAAFKAVEDGKQA
AVLVPTTVLARQHWQTFRERFSDAAVTVEMVSRLRTSADIKKTLERAAEGKVDILIGTHR
LLQRDVRFKDLGLLIVDEEQRFGVSHKEKLKKMRAAVDVLTLTATPIPRTLHMSLAGLRD
LSVIDTAPVDRLAVRTYVTKFDDDVIAEAIRRELRRGGQVFFVHNRVQSINAMAEFVQTL
VPEARVAVGHGQMGEKQLEQVMLDFIEGRANVLVCSTIIENGIDIARANTIIINRADCFG
LAQLYQLRGRVGRSKVRAYAYLLIPGEATLTREARERLKVLQDLSDLGSGFRIASHDLEL
RGAGDLLGGNQSGQIAAIGFEMYSDLLEETIAELKGLEREQKIDPEIKLGLSAFLPEKYM
PDPNQRLVFYKKLAAADDEQTLYEVVDELRDRYGELPEPAQVLHEQMKLRVLMKQLKIEL
AEFTGRRLIFSFHAETPVPPEKILARLDDPERYSFTPDYRLSINLGRMSREDVLQAAKKE
LKAFL
NT seq 3438 nt   +upstreamnt  +downstreamnt
ctgctgcaacaggtgcgcgaaggcgcgcggcgtatagaaatccaggggctgaccggctcc
tgcgatgcctttctgctggccgcactgctgcgcgaaaccaccgaacccctctacatcctc
acgccagacgagagcagcgccgagcgactggccggcgatcttgccttttactgggaacag
cccgagcagatctgtctctttccgcagtgggaagtcaccccttttgaacccctctccccc
catcccgaagtggaagcacgccgcatcgccaccctggccgccatgctcgacggcagcgcc
cgggcggtgattctgccggtccgcgccgccatgcagcgcgtgatcccacgtactatcctc
caagatctgagcctgagtctgaaggttgaggatgaatacgagcgctccccccttctgcac
cgcctgcacgagctgggctaccaatcggtgccgctggtggaagatcgcggcactttcgct
gtacggggcgatatcatcgacgtcttcccgccgacccatgacatgcccttgcggctggaa
tttttcggcgatttcatcgagcgcatccgccccttcgatcccgccgaccagcgctcgcgc
gaggaagagatcaaagaattcaccctgctgccggcacgggagatggttctggctggctcg
cactgggaccggttcacgcgccgcttcaaggagcgctgcgatgccctcgacctgccgcgt
ccccaacgggaacaacgcctcgaggcgctgcgcgaagggcttctggccccggggagccac
tttctgctgcccctcaactacgaagggctcgacacttttttcgattacgccggcaccggg
cgctggacgatcgttgaaccggcccgccttgaacaggagtccgacagcttcgccgccgaa
acactcaacggtgaacagcgggcgatcgacaagggagagccttacggcagctgccgggaa
ctctacctgtccagcagtgaactggaagcgcatctttcccgggcaccgtctcgcctcgac
ctggtggcgctgcaggtctatcgactcgaggacgagcgccccagccttcatttcgacgtc
cagggcaatggcgatctgcgcgccgccctcaaagccgaagggggcaccctgccgccgctg
gtggagaggttgcgccagtggcgtaatgagggctggcgcgtcctgctggtctgtcaccag
cgcggccaggccgaacgactgcaggatcttctcgaaccgcacggcgcatcaccacctttt
gatccggatgcgcgtttcggcgaggcacgcaaggggcaggcgctgctggtgcttggggac
ctgtccgccggcttccgcctgccggatgagcgcctggccgtcattaccgaggaggatatc
ttcggagtccggacgcgccgccggggccgggccggggccaaggcgcgggccatgctctcc
tcgctggccgaaatcaaggaaggcgacttcatcgtgcacaccgaccacggcgtcggcatc
tatcgcggcctgcgccatcttgccctgggagatgtcgagggcgatttcatgcaccttgaa
tatgccggcggcgacaagctttacctgccggtggatcgcatcgaaaaggtgcaaaagtat
gtcgccagtgaagggcacgcgccgcgtctcgacaaaatgggcggccaggggtgggaaaaa
gccaagctgcgggcgcgcgccgccgccgaggaactggcgcgggagctgctcaagatctac
gctcagcgcgagatggccagcgctttctccttctcgccgccggatcgcatgtatcgcgaa
ttcgaggcggccttcccctacgaggagacccccgaccaggcccaggccatcgaagaagtg
ctggccgacatgcagaatgaacgccccatggatcgcatcgtgtgcggcgatgtcggctat
ggcaaaaccgaggtcgccatccgcgctgccttcaaagcggtggaggacggcaagcaggca
gcggtgctggttcccacaacggtgctggcgcgccagcactggcagacctttcgcgaacgt
ttctccgatgcagccgtcactgttgaaatggtctcgcgcctgcgcacctcagccgacatc
aaaaaaaccctcgagcgcgccgccgaagggaaggtcgatatcctgatcggcacccaccgc
ctgctgcagcgcgatgtgcgcttcaaggatctgggtctgctcattgtcgatgaggagcag
cgcttcggcgtcagtcacaaggaaaaactcaagaagatgcgcgccgcggtcgacgtgctg
accctcaccgccacccccattccgcgcacgctgcacatgagcctcgccggtttgcgcgac
ctgtctgttatcgataccgcgccggtggaccggctggcggtgcgtacctatgtcaccaag
ttcgacgatgatgtgatcgccgaggcgatccggcgcgagctgaggcgtggcggccaggtc
ttcttcgtccacaaccgggtgcagtccatcaacgccatggccgaattcgtgcagaccctg
gtccccgaagcgcgggtggcggtcggacacgggcagatgggggaaaaacagctcgaacag
gtgatgctcgacttcatcgaagggcgcgccaatgtgctggtgtgcagcaccatcatcgaa
aacggcatcgacatcgcgcgggccaacaccatcatcatcaaccgtgcggactgcttcggg
ctggcgcaactctaccagctgcgcggccgggtcggacgttccaaggtgcgcgcctacgcc
tacctgctcatccccggcgaagccaccctcacccgcgaagcccgcgagcggctgaaggtc
ctgcaggacctctccgacctggggtcaggcttccgtatcgccagccacgacctggagctg
cgtggtgcaggcgatctgcttggcggcaaccaatccggccagatcgccgccatcggcttc
gagatgtacagcgacctgctggaggaaaccatcgccgaactcaaggggctcgagcgcgaa
cagaagatcgatccggagatcaaactggggctgtcagctttcctgcccgaaaaatacatg
cccgatcccaaccagcgtctggtattctataaaaaactggcggccgccgatgacgaacag
accctgtatgaggtggtcgatgaactgcgcgaccgctacggggagctgccggagccggcc
caggtgctgcacgagcagatgaaactgcgcgtgttgatgaaacagctcaaaatcgagctg
gccgaatttaccgggcgacgccttattttttcttttcatgccgaaactccggtcccgccg
gagaagatcctggcaaggctcgatgaccctgaacgctacagcttcactcccgattaccgg
ctcagcatcaacctcggccgcatgtcgcgcgaggatgtgctgcaggcggcaaaaaaagaa
ttgaaagcatttctttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (70)   

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