KEGG   Geobacter sulfurreducens KN400: KN400_3047
Entry
KN400_3047        CDS       T01940                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
gsk  Geobacter sulfurreducens KN400
Pathway
gsk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gsk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KN400_3047 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gsk03021]
    KN400_3047 (rho)
   03019 Messenger RNA biogenesis [BR:gsk03019]
    KN400_3047 (rho)
Transcription machinery [BR:gsk03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     KN400_3047 (rho)
Messenger RNA biogenesis [BR:gsk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     KN400_3047 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB ATPase_2 AAA_25 NACHT AAA Spore_III_AA
Other DBs
NCBI-ProteinID: ADI85859
Position
complement(3304418..3305665)
AA seq 415 aa
MNLQELKGKKINELAAIARGLNIEGASSLRKQDLIFAILNAQTEKNGMIFGEGVLECLPD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLHTGDTVSGQIRPPKEGERYFALLKVETVN
FEPPEVARDKILFDNLTPLYPDEKLKLETAPDNMSMRVMELVSPIGKGQRGLIVAPPRTG
KTMLIQNIANSIAENHPEVYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGA
ARNIEEGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMEVHLDRKLVEKRTFPAIDINKS
GTRKEELLVEKSALNRIWILRKVLHPMNVVDSMEFLLEKLSETKDNQAFLDSMSR
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgaacctgcaggagcttaaagggaaaaaaatcaacgaactggctgccattgccaggggg
ttgaacattgagggcgcgtccagtctgcgcaagcaggacctgatcttcgccattctcaac
gcccagaccgaaaagaacggcatgatcttcggcgagggggttctggagtgccttcccgac
ggcttcggttttctgagggcgccggattacaactacctgccgggccccgacgacatctac
gtatcgccgtcgcagatccgccgcttcaacctccatacgggcgataccgtttcggggcag
atccgtcctcccaaggagggtgagcgctatttcgctcttctcaaggtggagacggtcaac
ttcgagccccctgaggtcgcccgcgacaagattctgttcgacaacctgactcctctctat
cccgacgaaaagctcaaactcgaaaccgcgccggacaatatgtcgatgcgcgtcatggag
cttgtctcccctatcggcaaggggcaacgggggctcatcgtggcgccgccgcgtaccggc
aagacgatgctcattcagaacatcgccaattccattgccgaaaatcaccccgaagtctat
ctgatcgtgctgctcatcgacgaacggcccgaagaggtgaccgacatgcagcgctcggtc
aagggggaagtagtctcctccacctttgacgaaccggccacccgccacgtgcaggtggct
gagatggtcatcgaaaaggccaagcgcctggtggagcacaagcgcgacgtggtgattctc
ctcgactccataacccgtcttgcccgggcttacaatacggtgcttcctccttccggcaaa
atcctcaccggcggggttgacgccaacgccctccagaagcccaagcgctttttcggcgct
gcccgcaatatcgaagagggggggtctctgaccatcatcgcgtcggccctggtggatacc
ggcagcaagatggatgaggttatcttcgaagagttcaaggggaccggaaacatggaggtt
cacctggaccgcaaactggtggagaagcggaccttcccggccatcgacatcaacaagtcc
ggcacccgcaaggaagagctgctggtggagaagagcgcgctcaaccgcatctggattctg
cgcaaggtcctccatcccatgaacgtggtcgacagcatggagttcctcttggagaagctc
tccgagaccaaggacaatcaggcgtttctcgactccatgagcaggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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