KEGG   Galdieria sulphuraria: Gasu_52400
Entry
Gasu_52400        CDS       T02926                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
gsl  Galdieria sulphuraria
Pathway
gsl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gsl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gasu_52400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gsl03019]
    Gasu_52400
Enzymes [BR:gsl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     Gasu_52400
Messenger RNA biogenesis [BR:gsl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Gasu_52400
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Gasu_52400
SSDB
Motif
Pfam: Exo_endo_phos Exo_endo_phos_2
Other DBs
NCBI-GeneID: 17086068
NCBI-ProteinID: XP_005703657
UniProt: M2XB54
Position
Unknown
AA seq 633 aa
MVSERELKNVIERTEKNIGFSKKIALDSELGACQTQENYATAELNEEQLVDAQQTTEEIL
VESSTWREMEAHLVEGIEISHLVFLYTKVPVVNCDFIPFAVIRVGGSQSFPAETLENKFR
GRYKVQYRWFRQCWKYECSVPTCFQPATFQFSPKLIDSSNWEEPDINFEDSSERCFSFCS
KKCLQKFWQHLRSSLNYLSNMESFCNKNYSDERLQTKELYDRFLMEDTIVLTNQIENKPV
GWLRKYIPTLEDLGHCLRLQCYCERISDEGLVISVASKSIDSNPVIKPNSVGRQRAFISY
PDGEFVSLKESRKEHTFRVLTYNCLAEIYTSESLYTNCPDWALSWTYRRHNLLREILAYD
ADIMCLQEIQADHYEAHLKPAFIRNGYDGVYKVKSREAMGQRGKMDGCATLWKRDLFQLR
EQFAIDFNSAACMRYFSNPLALNRLMKGNIALVTILDFLDGGGSLCIVNIHIYWDPEQTD
VKLFQVNVLMEELEAYLSQIEPYTPLIIGGDFNSTPDSTIYELMSTGTVSGEREDIQRDP
LGLIAQMRLHHELNLQSAYSVCGNEPKYTNYTDNFVGVLDYIWYTPLQLSVTALLEVPSE
ADIVSPTEPSLPNHFWSSDHIALMTEFRRIIKE
NT seq 1902 nt   +upstreamnt  +downstreamnt
atggtatctgagagagaactgaagaacgtaattgaacgaaccgaaaaaaacattggcttt
tccaaaaaaattgctctcgacagcgagttaggagcttgccaaactcaggagaactatgct
accgcggagttgaatgaagagcaacttgtcgacgcacaacagacgactgaagagattttg
gtggaaagttcaacatggcgtgaaatggaagcacatctagtggaaggaatagaaataagt
cacttggtttttctttatactaaagtacctgtagtaaactgtgactttattccctttgca
gttataagagttggtggtagccaaagctttccagcggaaactttagagaataaatttcgt
ggacggtacaaagttcaatatcgatggtttcgacaatgttggaaatatgagtgttcagtt
ccaacttgttttcagcctgctactttccagttttctcccaagcttatcgactcgtcaaac
tgggaagaacctgatataaacttcgaagacagttctgagcgttgcttcagtttttgttct
aagaagtgtctccagaaattctggcaacatttgagaagcagtttgaactatctttcaaat
atggaatccttttgcaacaaaaactattctgatgagaggttacagacgaaggagctctat
gacagattcctaatggaggatacaatagttttaaccaaccaaatagaaaataaaccagtc
ggctggttacggaaatacattcctacattggaagacttgggacattgtcttagactacag
tgctattgtgaacggatatcagatgaaggcctcgtaatttcagttgcttctaaatccata
gatagcaacccggttattaagcctaacagtgttggacgccaacgtgccttcatttcttat
ccagatggagaattcgtgtctttaaaagagagccgaaaggaacatacttttcgtgtatta
acttacaattgtcttgcagaaatatatacatcagaatcattgtatactaattgtcctgac
tgggcgttgtcttggacttatcgtcgacataacttattgcgtgaaatactcgcttatgat
gcggatataatgtgcctgcaagaaatacaagcagaccactatgaagctcatttgaaacca
gcctttattcgtaatggatacgatggagtctacaaggttaaatcgcgtgaggctatgggc
caaaggggcaagatggatggctgtgcaactttatggaaaagagacttgtttcagctaaga
gagcagttcgcaattgactttaactctgctgcatgtatgagatacttttccaatcctctc
gccttgaatcgtctaatgaaaggaaacattgcgttggttaccattttagactttttagat
ggaggtggatctctgtgcattgtcaatatccatatttactgggaccctgaacaaacagat
gtgaagttgtttcaagtgaacgttcttatggaagagttggaagcatatttatcccaaatc
gagccgtatacgcctcttatcataggtggggattttaatagcacaccagatagcacaata
tatgaattaatgtctacggggactgtctctggagaaagagaagatattcaaagagatcca
ctaggtctgattgcgcaaatgcggcttcatcatgagctaaacttacaaagcgcgtattca
gtgtgcgggaatgaaccaaagtatacgaattacacggataactttgttggagtacttgac
tatatatggtacactcccttgcagttatctgttacggctctgttagaggttccttcagaa
gcagacatcgtgtcacctacagagccaagtcttccaaaccatttctggtcctccgatcac
attgctttaatgaccgagttccgtcgaattattaaagagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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