KEGG   Guillardia theta: GUITHDRAFT_76379
Entry
GUITHDRAFT_76379  CDS       T02925                                 
Name
(RefSeq) replication factor C, subunit RFC4
  KO
K10755  replication factor C subunit 2/4
Organism
gtt  Guillardia theta
Pathway
gtt03030  DNA replication
gtt03410  Base excision repair
gtt03420  Nucleotide excision repair
gtt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gtt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GUITHDRAFT_76379
   03410 Base excision repair
    GUITHDRAFT_76379
   03420 Nucleotide excision repair
    GUITHDRAFT_76379
   03430 Mismatch repair
    GUITHDRAFT_76379
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gtt03032]
    GUITHDRAFT_76379
   03036 Chromosome and associated proteins [BR:gtt03036]
    GUITHDRAFT_76379
   03400 DNA repair and recombination proteins [BR:gtt03400]
    GUITHDRAFT_76379
DNA replication proteins [BR:gtt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    GUITHDRAFT_76379
  DNA Replication Termination Factors
   ELG1-RFC complex
    GUITHDRAFT_76379
Chromosome and associated proteins [BR:gtt03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    GUITHDRAFT_76379
DNA repair and recombination proteins [BR:gtt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     GUITHDRAFT_76379
  Check point factors
   HRAD17(Rad24)-RFC complex
    GUITHDRAFT_76379
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 AAA_11 AAA_16 Rad17 AAA_22 RuvB_N SLFN-g3_helicase DEAD AAA_assoc_2 ADK Mg_chelatase AAA_30 AAA_14 AAA_28 AAA_7 AAA_24 AAA_19 AAA_5 ResIII DUF815 RNA_helicase ATPase_2 AAA_3 bpMoxR AAA_18
Other DBs
NCBI-GeneID: 17296236
NCBI-ProteinID: XP_005826503
JGI: Guith1_76379
UniProt: L1ITG4
Position
Unknown
AA seq 324 aa
MVPWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLY
GPELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSSYPCPPFKLVILDEADCMT
TDAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIAD
KEGFQLPSDVTDALVNISGGDLRRAITMMQNTYILHGNSMKGQDIIENAATIPDSVILDL
VNSCKYNSFEKIQSKVNDIIADGYPANQIHDWVMSKEAFGISAKSKSIICKALGTTDMRL
TDGSDVTLSLLHLVSVIMQALQTS
NT seq 975 nt   +upstreamnt  +downstreamnt
atggtgccgtgggtggagcagcatcgcccgtcctctatcgcgcaggtcgcccaccagcgc
catgtcgtcgccacactctcgtcggctgtcgagagcggcaatctccctcatttgctcttc
tacggaccccctggaacagggaagacatcgaccatcctcgctctcgccaaggacctgtat
gggccagagttgtacaagtcgagggttctggagctgaatgcgtccgatgaacgagggatt
gatgttgtaagaaacaagataaagcacttcgcgtcgctcgccgtctcttcctccaaaagc
tcttcgtatccttgtcctcccttcaagcttgttattctggacgaggctgactgtatgacg
actgatgcacaaagtgccttacgaaggaccatggaaacctgcacccgtgtcacgcgcttc
tgtatcatatgcaattatgtcagcaggatcatctcacccatcgcctcacgttgtgcgaag
tttcggtttcagcctgtctccaccgaggtgatgctcgagaggctcaacatgatagccgac
aaggaagggtttcagcttccttcagacgtgacggatgctctggtcaacatctcgggggga
gaccttcgtcgggcgatcaccatgatgcagaacacgtacatcttgcacgggaactcgatg
aagggacaggacatcattgagaacgctgctacaattcctgattcggtcattctggacctt
gtgaattcttgcaagtataactcattcgagaaaattcaaagcaaagtcaacgatatcata
gctgatgggtacccggccaaccaaattcatgattgggttatgagcaaggaagctttcggt
atctcggcaaagagcaagtcgatcatctgcaaggccttgggaacaaccgacatgaggctg
accgacgggtctgatgtcaccctctccctgctccatcttgttagcgtgatcatgcaagcc
ctacaaacttcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (59)   

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