KEGG T00521: Gura

Geobacter uraniireducens: Gura_3452

Entry

Gura_3452 CDS T00521

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

gur Geobacter uraniireducens

Pathway

gur03410	Base excision repair
gur03420	Nucleotide excision repair
gur03430	Mismatch repair
gur03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:gur03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:gur03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:gur03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:gur03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4059086..4060690)

AA seq 534 aa
MGLKEYASKRRFEKTPEPKPDVPHEGRRLVFVVHKHAARALHYDLRLELEGVLKSWAVPK
GPSLDPSVKRLAVMVEDHPLDYRDFEGVIPEGNYGAGSVIIWDRGFYRHPSAGDENENEK
LLLDGLRKGDMKFVLEGEKLRGEFALVRMGKDGKSWLLLKKKDRYASKGEILQENRSVVS
HKTLEEMLEAGGQKSFKQKKINQIRLHEAKESEELHDAPVKPMPHNIKPMLATLAREPFD
HPDWVFEVKWDGYRAIAEMRDGDVALYSRNLLSLQQKFSPIADALRECRFDAVLDGEIVV
VDDRGHPDFQLLQNYQKSGNGHLLYYVFDLLYFQGHDLTGLPLLRRKEILKKILPSAPKI
KYSDHVWKDGVLFFTVVREKGLEGIIAKHAQSAYQMGIRSRQWLKVKTRLTQEGVIAGFT
EPRGGRKCFGTLVLGVFQGDELIYIGHSGGGFGAKDLQEIRAKLEPLIRKECPFKVRPET
NTPATWVKPELVCEISLSGWTEDAVMRHPVFLRLREDKTAREVVRDSGGEGGNL

NT seq 1605 nt +upstreamnt +downstreamnt
atgggcttaaaggaatacgcatccaaacggcgattcgagaaaacacccgaaccgaaaccg
gacgttcctcacgaggggcgccgtctcgtgttcgtcgtgcacaaacacgcggcccgggcc
cttcattatgatctcaggctggagctggaaggggttctgaaaagctgggccgtgccgaag
ggaccctcgctggatccttccgtaaaaaggctggccgttatggttgaagaccatccgctc
gattacagggatttcgagggggttatcccggagggtaattacggcgcaggaagcgttatc
atctgggaccggggtttctatcgtcacccctctgcaggagatgagaacgaaaacgagaaa
cttcttctggacggattaagaaaaggggatatgaagtttgtcctcgaaggggaaaaactt
cggggtgaattcgcgctggtcaggatgggaaaggacgggaagtcgtggctgctcctgaag
aaaaaagaccgctatgcaagcaagggggaaattctccaggagaaccgttccgtcgtgtcc
cataaaaccctggaggagatgctcgaagccggcggccagaaatctttcaaacaaaaaaaa
ataaatcagatccggcttcacgaagcgaaggaaagcgaagagctgcatgatgcgccggtt
aaaccgatgccgcacaacataaaaccgatgctcgcgaccctggccagggaaccgttcgac
catccggactgggtcttcgaagtgaaatgggacgggtaccgggccatcgcagagatgcgg
gacggagacgtcgcgctctattcccgaaacctgctctcgttgcaacaaaagttttctccc
atcgcggacgcgttgcgggaatgcagattcgatgcggttctggacggcgaaatcgtcgtc
gtggatgatcggggacatcccgatttccagttgctgcagaattaccagaagtctggaaac
ggccatcttctttactacgtcttcgacctcctctacttccagggacatgatctgaccggc
ctccccctgctcaggaggaaagagatcctgaaaaaaatcctcccttcagccccgaaaata
aaatacagcgatcacgtatggaaagatggggtcctgtttttcaccgtcgtaagagaaaag
ggactggaggggatcatcgccaaacatgcgcaaagcgcgtaccagatggggataaggagc
cggcagtggctgaaggtgaagacgcggctcacgcaggagggggtgatcgccggtttcacg
gaaccgaggggtgggagaaagtgtttcggcaccctcgtcctgggcgtgttccaaggggac
gagctgatctacatcggccattcgggaggcggattcggggcgaaagatctgcaggaaatc
cgcgcgaaactggagcccctgatccggaaggaatgcccttttaaagtgcggccggagacc
aataccccggccacctgggtaaagccggagctggtctgcgagatttccttatccggctgg
actgaagatgccgtcatgagacaccccgttttcctgcggctgcgcgaggacaaaaccgcc
cgcgaagtggtgcgcgacagcggcggcgaaggaggtaacctatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-GUR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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