KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0280
Entry
HMPREF0424_0280   CDS       T01146                                 
Symbol
truA
Name
(GenBank) tRNA pseudouridine synthase A
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gva03016]
    HMPREF0424_0280 (truA)
Enzymes [BR:gva01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     HMPREF0424_0280 (truA)
Transfer RNA biogenesis [BR:gva03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    HMPREF0424_0280 (truA)
 Prokaryotic type
    HMPREF0424_0280 (truA)
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-ProteinID: ADB14577
Position
299782..300699
AA seq 305 aa
MRLRLDLAYDGGGFYGWAKQPTLRTVQGEIEGALHTVLRVPEGDSAEPLRLTVAGRTDTG
VHASHQVCHLDVCEETLLRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDARF
SALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFARPN
PGGTTIRDVKSACWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRSLVQ
ACVQIGCGKRTLDWFVEKINTPLREGSTGPIAPQGLTLEYVAYPPDNELAERAEKIRARR
DSAEL
NT seq 918 nt   +upstreamnt  +downstreamnt
atgcgacttcgcttagatttagcgtatgatggcggcggattttacggttgggctaagcag
cctactttgcgcaccgtgcagggtgaaattgagggggctttgcatacagtattgcgcgtt
ccagaaggggattctgctgagccgttgcgccttactgtggctggacgtacggatacgggc
gtgcatgcatcgcatcaggtttgtcatcttgatgtttgtgaagaaactttattgcgatgc
gtaggtcataccggattggacggtgtttgcgcgctcgagtacaggcttaagcatgttttg
ccacaagatatttcgttgcataaggttagcgttgcgcccattggttttgatgcacgcttt
tctgcgttagagcgcacgtatgtgtatcgtatttgcgacgcttctgattattgtgattat
gaccctcgtatgcgcggttttgttttgaaacttgatgatgttttggatgttgatgcaatg
aaccaggctgcgaggcttatgattggccttcacgattttggatcttttgcgcgccctaat
cctggaggcactactattcgcgatgtaaaaagtgcctgttgggaacgcgtgggaacgcgt
gctaatgacgtgcgcgttaagcttaaaactggatgcgtgccgcctgttgagcagggtttg
cttgagtttactattgttgctgatgctttcgctcacaatatggtgcgctctcttgtgcaa
gcttgtgtgcagattgggtgtggtaagcgcacgcttgattggtttgttgagaagattaat
acgccgcttcgagaaggttctactggtcctattgcgccgcaaggtttgactttagaatat
gtggcgtatccgccagataatgagcttgcagagcgtgcagaaaagattcgcgctcgccgt
gattctgctgagttatag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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