KEGG T01100: GYMC10

Paenibacillus sp. Y412MC10: GYMC10_5316

Entry

GYMC10_5316 CDS T01100

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

gym Paenibacillus sp. Y412MC10

Pathway

gym03410	Base excision repair
gym03420	Nucleotide excision repair
gym03430	Mismatch repair
gym03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:gym03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:gym03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:gym03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:gym03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

5986363..5987268

AA seq 301 aa
MGQLQNLLPKEPMAPISTDQITTGEDWGYQLKWDGVRILAGLDQNRVSLYSRKLLDKTSL
YPEVVQALSVLQDRRLLLDGEVVYFHPELGRPVFQKVLQRERSRTVSTSAPLFTYVLFDI
LVDGDEDLRKLPYLERHHRLKETVSDIPGLLTADLFLEGEPLWDWAEQRGWEGIVMKRLS
SPYREGKKHRDWYKKKIAVNMAASAVAMIIREGRVASLVIADDDGNYIGRASLGLNEQTK
KKLLQYAESHRADAIWRTLHTDLKKEQLAWLNQPLSVQVTFLEWSQDGMMRHPKLVSIEG
V

NT seq 906 nt +upstreamnt +downstreamnt
atgggacagttgcaaaatttgctgccgaaagagccgatggctccgatctcgacggatcag
attacgacgggcgaagattggggttatcagctgaaatgggatggcgtacgcattctggcc
gggcttgaccagaaccgcgtatccctgtattcccgcaagctgctcgacaaaacatccctg
taccccgaagtcgttcaggcattatccgtcctgcaggatcggcgtcttctcctggatggc
gaggtcgtgtattttcatccggagcttggccgccccgtctttcagaaggttctccagcgg
gagcgttcgcgtacggtcagtacgagcgctcctctgtttacttatgtgctgttcgatatc
ttggtggacggcgacgaggacttgcgcaagctgccttatctggaacgtcatcatcgtctc
aaggagacggtttccgacattccgggcctgctgaccgccgatctgtttcttgaaggcgaa
ccgttatgggactgggcggaacagcgcggttgggagggcattgtcatgaagcgcctctcc
tcgccataccgtgagggcaaaaagcatcgggattggtacaaaaagaaaattgccgtgaac
atggctgcctccgccgtcgccatgatcatcagggaaggtcgcgtagccagcctcgtcatc
gcagacgacgatgggaactacatcggccgggcttccctggggctcaatgagcaaacgaag
aagaaactgctgcaatatgccgaaagccatcgtgctgacgcgatatggagaacgctccat
accgacctgaagaaagaacagctggcctggcttaaccagcctttatcagtccaggtcaca
tttctcgagtggagccaggatggcatgatgcgccatcccaaactcgtatcgattgagggg
gtgtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-GYM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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