KEGG   Halomonas sp. KO116: KO116_04009
Entry
KO116_04009       CDS       T03800                                 
Name
(GenBank) NusA antitermination factor
  KO
K02600  transcription termination/antitermination protein NusA
Organism
hak  Halomonas sp. KO116
Brite
KEGG Orthology (KO) [BR:hak00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hak03021]
    KO116_04009
   03009 Ribosome biogenesis [BR:hak03009]
    KO116_04009
Transcription machinery [BR:hak03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    RNA polymerase-associated proteins
     KO116_04009
Ribosome biogenesis [BR:hak03009]
 Prokaryotic type
  rRNA transcription factors
   KO116_04009
SSDB
Motif
Pfam: NusA_N KH_5 HHH_5 S1 DUF4332 RNA_pol_Rbc25 KhpA-B_KH MRP-S35
Other DBs
NCBI-ProteinID: AJY52472
UniProt: A0A0D5M8U7
Position
complement(4339345..4340859)
AA seq 504 aa
MSKEILMVVDAISNEKGVPRDVIFEAVEAALASASRKRFDKEEANVRVHIDRRTGEYETF
RFWTVVEDDEFETPDYEIKETIAEQRDPPLKLGDVVEKTIENASFGRIAAQTAKQVIVQK
VREAERAEVVRQYADREGELVAGIVKKTTRDGLIIDLGENAEAFLPRNEMIHGERYRMNE
RVRALLIKVDPDARGAQLQLSRTCPELIIELFKIEVPEIAEQLIEIKGAARDPGSRAKIA
VKTNDRRIDPVGACVGMRGSRVQAVSSELQNERVDIVLWDDNPAQLVINAMAPADVGSIL
VDEDAHAMDVAVAQDNLAQAIGRSGQNVRLASELTGWRINVMTEEEAESKRDQEIDSLVD
SFIQHLEVDEDVARLLVEEGFTTLEEVAYVPMEEMLEIEEFDEDLVEQLRARAKDELLTM
AIASEEALDGAQPAADLLEMDGMERHLAFILASRGIVTMEDLAEQSVDDLVDIEELDEAR
AAALIMTARAPWFEVDDASDSNTQ
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgagtaaagaaattttaatggtcgtagacgcgatctccaatgagaagggcgtcccacgt
gatgtcatcttcgaagcggtagaagccgctcttgcgagcgcgtcacgtaagcgttttgac
aaagaagaagccaatgtgcgcgtgcatattgaccgtcgcaccggtgaatacgaaaccttc
cgcttctggactgtcgtagaagacgacgagtttgaaacgccagattacgaaattaaagag
accatcgccgagcagcgtgatccgccgctaaagttgggcgatgtggtcgaaaaaaccatc
gaaaacgcatcgtttggtcgtattgctgcgcaaaccgccaagcaggtgatcgtacagaaa
gtacgtgaagctgagcgggctgaagtcgtgcgccaatatgcagatcgtgaaggcgaactg
gttgccggcattgttaagaaaaccacccgcgacggcctgatcattgatttgggcgaaaac
gctgaggcgtttttaccccgcaatgaaatgatccacggtgagcgttaccgcatgaacgag
cgggtgcgcgccctgttgatcaaagtggatcccgatgctcgtggcgcccagcttcagctg
tcgcggacatgtcccgagctgatcatcgagctgttcaaaatcgaagtgcctgaaatcgct
gagcagctgattgagattaaaggcgctgctcgtgatcccggttcgcgcgccaaaattgcg
gttaaaaccaatgatcgccgcatcgacccggtgggtgcctgtgtgggaatgcgcggttcg
cgcgttcaagcagtctcttccgagctgcaaaacgagcgcgtcgatattgtgttgtgggac
gacaatcccgcccagttggtcattaatgccatggcgcccgccgatgttgggtctatcctt
gttgacgaagatgcccacgcgatggacgtggccgtggcgcaagataatctggctcaggcc
attggccgtagcggtcagaacgtgcgtttggcctctgagcttaccggctggcggattaac
gtcatgaccgaagaagaagcagagtctaagcgcgaccaagagattgatagcctggtggac
tctttcatccagcaccttgaagtggatgaagatgtcgctcgcctgttggtggaagagggg
ttcactaccctggaagaagtcgcctacgtgccgatggaagagatgctcgaaatcgaagag
ttcgatgaagatttagtagagcagctacgcgcacgtgcgaaagacgagctgctgacgatg
gcaattgcctcggaagaagcgctagacggtgcccaaccagcagctgatctgctggagatg
gatggcatggagcgccacctggccttcattttggccagtcgcggcattgtcactatggaa
gatctcgccgagcagtctgtcgacgatctggtcgatatcgaggagttggacgaagcgcgc
gcagcggcactgatcatgactgcccgtgcgccctggtttgaagtcgatgacgcatcggat
tcgaacacacagtaa

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