KEGG   Helianthus annuus (common sunflower): 110877877
Entry
110877877         CDS       T05101                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3
  KO
K14328  regulator of nonsense transcripts 3
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03013  Nucleocytoplasmic transport
han03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110877877
   03015 mRNA surveillance pathway
    110877877
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:han03019]
    110877877
Messenger RNA biogenesis [BR:han03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     110877877
   mRNA cycle factors
    P-body specific factors
     110877877
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 110877877
NCBI-ProteinID: XP_021981790
Position
9:complement(63458074..63466564)
AA seq 487 aa
MKGPLDRTKVVLRHLPHTISESVIMEQIDARFAGRYNWFCFRSGKNSTKRQLYSRAYIDF
KRPDDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKQWSKKDGREGTIGKDPEYLE
FLEFISKPVENLPSAEIQLEKKEAERAGAAKEAPIVTPLMDFVRQKRAAKGVSRRSLLNG
KLMRRAGASSSNSSSVVVKHGSEKRTTSTMYVLKDSGKSRNSKEKSTYVKKDDRQVSDKS
GSVVLEEEKSASGAPDTGKKKILLLKGKEKEILQVVTDLTPQQNSPPAKPAYASGAARQN
QRHEASGRIIRSILVNKDARQNQSEPNQSLNQEKDRRPPRAPLNDDKVHGHDLHKDKLSR
NNRDKPDRGVWTPLRRSDGSDESLSSSASRSTQVGSDSAEGTCGEAKYDVSNERGVELKP
VGTGRGAHFFSDNGTHKHSGRRASTNNAKDADGSSNVNDGKPSKRGVSAGYGSHEKRVWV
QKPSSGS
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgaaaggtccgttagatcggacaaaagtcgtgctgcggcacttgccgcacacgatttcg
gagtcggtgatcatggagcagattgatgctcggtttgccggtcgatataactggttctgt
ttccgttctggaaagaatagcacaaagcgtcaattatattccagagcctatattgacttt
aagcggccggatgatgtcattgagtttgcagagttcttcgatgggcatgttttcgttaac
gagaagggtacccaatttaaaacaattgttgaatatgcaccttcacagcgtgttcccaag
caatggtctaaaaaagacggacgtgaagggacaatagggaaagatcccgagtatcttgaa
ttccttgagtttatttcaaagcctgtggagaatcttcccagtgcagagatacaattggaa
aaaaaggaagctgagcgagctggtgctgctaaagaagctcctatagtcacaccgttaatg
gattttgttaggcagaaacgagctgccaagggtgtatcccggcggtcattgcttaacggg
aagttaatgagaagggctggtgcatcatcgtcaaattcaagttctgttgtagtgaaacat
ggttctgaaaagaggacgacttctaccatgtatgtcctaaaggatagtggaaagagcaga
aacagtaaagagaagtcaacttatgtcaaaaaagacgatcgtcaagtttctgataaatct
ggaagtgtagtactggaggaagaaaaaagtgcatctggagcccctgatactggaaagaag
aaaattctacttttaaagggaaaagaaaaggaaattctccaggtggtcacagacttgacg
cctcagcagaactcaccaccagctaaacctgcgtatgcatctggtgctgctagacagaat
caacgacatgaggctagtggaaggattattcgaagtatactcgttaacaaggatgcaagg
caaaatcagtctgaaccgaatcagagtttaaatcaggaaaaggaccgaagaccacctagg
gcaccgctaaacgatgataaggtccatgggcatgatttgcataaggataagctatctagg
aataacagagacaaaccggatcgtggtgtttggactcccctgcgccgttctgacggtagt
gatgagtcgttgtcctcttctgcttctcggtccacgcaagtgggatcagattccgcagaa
ggaacttgtggtgaagccaagtatgatgtgtcaaatgaacgtggtgtggaacttaaaccc
gttggaactggacgcggtgctcatttcttttctgataatggtacccataaacacagtggt
cgccgtgcatccactaataatgctaaggatgcagatggctcttcgaatgtgaacgacgga
aaaccttcaaaaagaggtgtttctgctggctatggttcccacgagaagcgcgtatgggtc
caaaagccaagttctggttcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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