KEGG   Helianthus annuus (common sunflower): 110885650
Entry
110885650         CDS       T05101                                 
Name
(RefSeq) polyadenylate-binding protein 2
  KO
K13126  polyadenylate-binding protein
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03015  mRNA surveillance pathway
han03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110885650
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110885650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:han03019]
    110885650
   03041 Spliceosome [BR:han03041]
    110885650
Messenger RNA biogenesis [BR:han03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110885650
   mRNA cycle factors
    Stress granule specific factors
     110885650
Spliceosome [BR:han03041]
 Complex C
  Other components
   Complex C specific factors
    110885650
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 Nup35_RRM RRM_3 RRM_7 DUF5062
Other DBs
NCBI-GeneID: 110885650
NCBI-ProteinID: XP_021989043
Position
10:132999346..133003204
AA seq 638 aa
MAAQVSQAQAVNGGGGAQQVVTVSLYVGDLDLSVTDSQLYDLFNQIGQVVSVRVCRDLST
RRSLGYAYVNYVNPQDAARAIEVLNFTPVNGKSIRIMYSHRDPSVRKSGSGNIFIKNLDK
AIDQKALHDTFSTFGNILSCKIATDSTGQSKGYGFVQYDSEESAQQAIEKLNGMLLNDKQ
VYVGPFLRKQEREQAVDKAKFTNVFVKNLSESTTDDDLTKAFSEYGTITSAVVMKDADGK
SKGFGFVNFENADDAAKAVEGLNGQKFDEKEWYVGKAQKKTDREQELKQKFEQNMKEAVD
KSQGLNLYIKNLDDTVSDETLRELFAPFGTITSCKVMRDPNGASKGSGFVSFSTSEEASK
ALSEMNSKMVASKPLYVALAQRKEDRRARLQAQFSQMRPIAMGPAGAPRMPMFPPGGHGL
GQQMFYGQAQPTFIPPQPGFGYQQQLVPGMRPGGGPLPNFFMPMVPPGQQGPRPGGRRVG
VPGQQNQQQPVPLMQPQMMPRGRVYRYPPGRNIGDMGSVPYDVGNAMQLRDAGGIPSQPI
PIGALASALANASPTEQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPE
ALKAKVAEAMEVLKSVSQQQGSPADQLAALSLNDGIVS
NT seq 1917 nt   +upstreamnt  +downstreamnt
atggcggcgcaggttagtcaagctcaggcggttaacggtggtggtggtgctcagcaggtt
gtgacggtgtcgttgtatgtgggggatttggatttgagtgttacggattcgcagttgtat
gatttgtttaatcagatagggcaggtggtttcggttagggtttgtagggatttgtctact
cgacgctctcttggttatgcttacgtcaactatgtcaatccacaagatgctgcaagagct
attgaggtgctgaacttcacgcctgttaatgggaagtcgatcaggattatgtattctcat
cgcgatcccagtgtgcgcaaaagtggttctggaaatatttttatcaagaatttggacaag
gcaattgaccaaaaggcactacacgataccttttccacattcgggaatattctctcttgc
aagatagctaccgattcaaccggtcagtcaaagggctacgggtttgtgcagtacgacagt
gaggaatccgcacaacaagctattgagaaactcaacggcatgcttctgaacgacaaacaa
gtgtacgtgggtcccttcttgcgcaagcaagaaagagaacaggctgttgacaaggccaaa
ttcactaacgtctttgttaaaaacctttctgaatcaacaactgatgacgatttaaccaag
gcgttcagtgaatatggaacaatcacgagtgctgttgtaatgaaggatgcagatgggaag
tcgaaaggttttggtttcgttaactttgagaatgctgatgatgctgcaaaagcggtagag
ggtcttaacgggcagaagtttgatgagaaagaatggtatgttggaaaagcgcaaaaaaag
actgatagggaacaggaactaaaacaaaagtttgagcaaaacatgaaagaagcggtagac
aaatcacaggggcttaacctgtatattaagaatttagatgatactgtatccgatgaaact
ctcagggaactgtttgcaccttttggtaccattacttcttgcaaggtcatgcgagatcct
aatggagctagcaaaggatccggttttgtttcattctcgacttctgaagaagcttcgaaa
gcactttctgagatgaacagcaagatggttgctagcaagcctctgtatgttgcactcgca
caacgcaaagaagacagaagggcacgattgcaggcacagttttcgcaaatgcgcccaatt
gcaatgggacccgctggagctcctcgcatgccaatgttcccacctggtggtcacggtctt
ggtcaacaaatgttttatggtcaagctcaacctaccttcatcccgccacaacctggtttt
gggtaccagcagcaacttgttccaggtatgaggccgggtgggggcccattgccaaacttt
ttcatgccaatggttccgccaggtcagcagggaccgcgtccagggggaaggcgtgttggt
gttcccggtcagcagaatcagcaacagccagttcctcttatgcagccacagatgatgcca
cgtgggcgggtgtatcgttacccgcctgggcgcaacattggtgatatgggttctgttcca
tatgatgttgggaacgcgatgcagttgcgtgatgctggtggaatcccgtcgcagccaatt
ccgattggtgccttagcttctgcacttgcaaatgcttccccaacagagcaaagaaccatg
ttgggtgagaatctgtacccactagtggaacagctggaaccagagtcagcagcaaaggta
actggaatgcttttggagatggatcagacggaggttcttcacttgctggaatcaccggaa
gcattgaaggcgaaggttgcagaggcaatggaggtcctcaagagtgtgtctcagcagcag
ggcagccctgctgatcaacttgctgctttgtctttgaatgacggcattgtttcctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (71)   

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