KEGG   Helianthus annuus (common sunflower): 110929046
Entry
110929046         CDS       T05101                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03013  Nucleocytoplasmic transport
han03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110929046
   03015 mRNA surveillance pathway
    110929046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:han03019]
    110929046
Messenger RNA biogenesis [BR:han03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     110929046
   mRNA cycle factors
    P-body specific factors
     110929046
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 110929046
NCBI-ProteinID: XP_022027836
Position
3:complement(87957770..87970305)
AA seq 469 aa
MKDPLDRTKVVLRHLPHTISQSALMDQIDVRFSGRYKWFWFRSGKQSLKSPSYSTAYIDF
KRPDDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKQMSKKDGREGTIGKDPEYLE
FLEFVSKPVENLPSAEIQLERKEAERAGAAKEAPIVTPLMDFVRQKRAAKGGPRRSLPNG
KLMRRAGASSSSSSTVAKRGSEKRTSSTMYVLRNSGKSTNGKEKSTYAKRDDRQVSDKPG
SVILEEERGASGAPDTGKKKILLLKGKEKEIQVVTSLTPQQNSSTIKPAARTNQRHEASG
RIIRSILVNKDTRQNQSDQSQNVYQEKDRKPPRGPLLKDSDGLPDDKHGCMNNKDKPDRG
VWTPLRCSDGSQSAKVLPDSAEGTREEAKYDVSNERGVELKTTGAGRGGHFSSENGTHKH
SGRRALTHNAKDADGSSNSNEGKPLKRGVSAGYGSHEKRVWVQKPSSGS
NT seq 1410 nt   +upstreamnt  +downstreamnt
atgaaggatcccttagatcggacgaaagttgtgttgcggcacttgccgcatacgatttct
cagtcggcgctcatggaccagattgacgttcggttttctggtcggtataagtggttctgg
ttccgttctggaaagcagagtctgaagtctccatcatattccacagcatatatcgacttt
aagcggccagatgatgtcattgagtttgcagagttctttgacgggcacgtttttgtcaat
gagaagggtacccaatttaaaacaattgttgaatatgcaccttcacagcgtgttcctaaa
caaatgtctaaaaaagatggacgtgaagggaccatagggaaagatccggaatatcttgaa
ttcctcgagtttgtttcaaagcctgttgagaatcttccaagtgcagagatacaattggaa
cgaaaggaagccgagcgagctggtgctgctaaggaggctcctatagtcacacctttgatg
gattttgttcggcagaaaagagctgccaagggtgggccccggaggtctttgcctaacggg
aaattaatgaggagggctggtgcatcatcatcttcaagttctactgtagcgaaacgtggt
tctgaaaagaggacaagttccaccatgtatgtcctaaggaacagtggaaagagcacaaat
ggtaaagagaagtcaacttatgctaaacgagatgatcgtcaggtttctgataaacccggc
agtgtaatattggaagaagaaaggggtgcttctggagcccctgataccgggaagaagaaa
attttattgttaaagggaaaagaaaaggaaatccaggttgtcaccagcttaacacctcag
caaaactcatcaactattaaacctgctgccagaacgaatcagagacatgaggcgagtgga
agaattatcagaagcatacttgttaacaaggatacacgacaaaatcaatctgatcagagt
cagaatgtatatcaggaaaaggacagaaaaccaccacggggcccgcttttgaaggactca
gacggtttaccagatgataagcatggttgtatgaataataaagataaacctgatcgcggt
gtttggactcccttgcgttgttctgatggatctcaatctgcaaaagtgctaccagattct
gcagaaggaactcgcgaagaagcgaagtacgatgtttcaaatgaacgtggtgtggaatta
aaaaccactggagctggacgtggtggtcatttctcttctgaaaatgggacccataaacac
agtggtcgccgtgcactcacacataatgctaaggatgctgatggatcttcaaattcaaat
gaggggaaacctttaaaaagaggcgtttctgctggttatggttcacatgagaagcgagtg
tgggttcagaaaccaagttctggttcttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (30)   

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