KEGG   Hyphomonadaceae bacterium UKL13-1: AEM38_08905
Entry
AEM38_08905       CDS       T04338                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hbc  Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hbc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AEM38_08905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hbc03400]
    AEM38_08905
Enzymes [BR:hbc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AEM38_08905
DNA repair and recombination proteins [BR:hbc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AEM38_08905
SSDB
Motif
Pfam: TRCF DEAD Helicase_C CarD_TRCF_RID UvrB_inter RecG_dom3_C SecA_DEAD AAA_25 AAA_22 AAA_16
Other DBs
NCBI-ProteinID: AMS30943
UniProt: A0A7U4QWF0
Position
complement(1914342..1917803)
AA seq 1153 aa
MSLVETLANAVGPLRVSGAVEGYDAGLIARAALLRGGVTLHVARDDAQASSFLAAVRFYA
PSLSVLRLPAWDCLPYDRVGPAPEISSTRLSTLTQLIRRKEGDAPVLVLTTGASLLQRVA
PRDRLRAASFSARPGQILDVTVIQAYFAANGYVRTATVRERGDFAIRGGVIDLFPPELPE
PVRLDLFGDTLESIRSFDPETQRSTHQLQGVVLAPVSEAILDDVAASRFRLGYLELFGAA
QGDPLYEAVTKRMRRNGMEHWLPLFHEHMETVFDYVGNHALISLDPHAMDAATERAAQVT
DYYEARRIPPPKGSAPYNPLPPERLYATVGELEGLLASRDVRRLSAYQEAEGGQALIESG
AKAGRNFAAERATEGVNVWDAARKHVEALAAQGVKPILAAWTDGSAERLGHVLQEHGMAA
LFPLPNADAIALMPKGAIGLAVLPLERGFVAEDYAILSEQDILGERLGRARKRRKAASII
LEAGSLSAGDLVVHIDHGIGRYEGLRTLDVQGAPHDCLELIYAGGDKLFLPVENIELVSR
YGSEDATALLDKLGGVAWQGRKAKAKQRLKDMAEALIKIAAARAAKVSEPILAGSGDYDE
FCARFPWDETDDQLSAIEDIFNDLAAGHPMDRLICGDVGFGKTEVALRAAFVVAMTGRQV
AVVCPTTLLSRQHFKTFSERFRGWPIRVRQLSRMVGSKETAETKRDLADGKIDIVVGTHA
IFAKDLTIRDLGLVIVDEEQHFGVKHKERLKELRTDTHVLTLSATPIPRTLQLSLAGIRE
MSIIATPPVDRLAVRTYVTPWDPITIREALLREKYRGGQAFFVAPRVEHLEDIERFMKEM
VPEMTYAVAHGQMSPTQMEPIVTAFYEGVYDVLISTTIVESGLDIPRANTLITWRADMFG
LAQMYQLRGRVGRSKTRAYAYLTVPAEKPITPSAEKRLKILQSLDSLGAGFQLASHDLDM
RGGGNLLGEEQSGNIREVGVELYQQMLEEAVASLQDGGEVVSARSWSPAINLGVAVLIPE
DYVADLNVRLSLYRRLSELESDADRDSYAAELADRFGPLPEEARQLIQIAGVKALCRKAH
IAKLDAGPKGAVLTFRPESAPDPMKLVAAVQKQPALFRLRPDGKMVVNGDWSTPEQRLKG
ARRAAAFLAAEMG
NT seq 3462 nt   +upstreamnt  +downstreamnt
atctctcttgtcgaaaccctcgccaacgccgttggcccgttgcgcgtgtcaggtgccgtt
gaaggctatgacgcagggctgattgcgcgtgccgctttgctgcggggcggggtgacgttg
catgtggcgcgcgatgatgcccaagcgtcgagctttctggcggcggttcgcttttacgcg
cctagcctgtctgttctgcggctgccggcttgggattgtttgccctatgaccgggtaggc
ccagcgcctgaaatcagctcgacgcggctatccacgctcactcaattgatccggcgaaaa
gagggcgatgcgccggtactggtattgacgacgggcgcctcccttctccaacgcgtcgcg
cctcgcgacaggctgcgcgcggcatctttctccgccaggcccggccagatcctcgatgtc
accgtcattcaggcctattttgccgccaatggctatgtgcggacagcgaccgtgcgggag
cgcggtgactttgccattcgcggcggggtgattgatctattcccgccagaattgccagag
cctgtgcgccttgatctgtttggcgatacgctggaaagcatccgcagctttgaccccgag
acccagcgctcaacccatcaattgcaaggcgtggtgttagcgcccgtctcagaagccatt
ctagacgatgtcgcggccagccgcttccgtctgggctatttggaattatttggtgccgcc
caaggcgacccgctctatgaagcggtcaccaaacgtatgcgccgcaatggcatggaacat
tggttgccgctgttccatgagcatatggagacggtgtttgactatgtgggtaatcacgcc
ctgattagtcttgatccccatgccatggatgccgcgaccgaacgtgcggcccaagtgacg
gattattacgaggcgcgccgcatcccgccgcccaaaggctctgctccttataacccgctg
ccacctgaacggctctatgccacggtgggtgaactagaaggcttgctcgccagccgcgat
gtgcgtcgtctcagcgcctatcaagaggccgaaggcggtcaagcgctgatcgagagcggt
gcgaaggcaggtcgcaactttgctgccgaacgcgccaccgaaggtgtcaatgtatgggat
gcggcgcgcaagcatgtcgaagctttggcggcccaaggtgtgaagccaatcttggctgct
tggacggatggctcggcagagcgtttgggccatgtcttgcaagagcatggcatggcggcc
ctgttcccactgcccaatgcggatgccattgccttgatgcccaagggcgcgattggtctg
gcggttctgccgctggaacgcggctttgtcgctgaagactatgccattctgtcggaacaa
gacattctgggtgagcgtttgggccgcgcacgcaagcgccgcaaggctgccagtattatt
ctggaggcaggcagcctgtcggcgggtgaccttgtggtgcacattgatcacggcattggt
cgctatgagggcctgcgcacgttggacgtgcagggcgcaccccatgattgccttgagctg
atctatgctggtggcgacaagctgttcctgcccgttgagaatatcgagctcgtttcgcgc
tatggctctgaagatgcgaccgccctgttggataaattgggcggtgtggcgtggcagggc
cgcaaggccaaagccaagcagcgcctgaaggatatggccgaagcgctgatcaagatcgcc
gcagcgcgcgcggccaaagtgtcagagccgattttggcaggctctggcgattatgacgaa
ttctgcgcccgcttcccgtgggatgagaccgacgatcaattgtcggccattgaagacatc
ttcaatgatctggcggctggccatccgatggaccggctgatctgtggcgacgtgggcttt
ggtaaaaccgaagtggccctgcgcgcggcctttgttgtcgccatgaccggccggcaagtg
gcggtcgtgtgccccacgactctcttgtcgcgccagcactttaagacctttagcgagcgc
ttccgcggctggccgatccgcgtgcgccaattgtcgcgcatggtggggtccaaggaaacg
gcagagaccaagcgcgacctcgccgatggcaagatcgatattgtggtcggcacccatgcc
atctttgcaaaggacctgacgatccgcgatctgggtcttgtgatcgtcgatgaagagcag
cactttggcgtgaagcacaaagagcgcctgaaagaattgcgcaccgacacccatgtgctg
accctgtcggccacccccatcccgcgcaccttgcaattgtcgctggccggtatccgcgag
atgtcgatcattgctactccaccggtcgaccgcttggccgtgcgcacctatgtgacgccg
tgggacccgatcacgatccgcgaagctttgctgcgtgagaaatatcgcggtggccaagcc
ttctttgtcgccccgcgggtggagcatttggaggatattgagcgcttcatgaaggaaatg
gtgcctgaaatgacctatgcggtggcgcatggtcagatgagcccaacccagatggagccg
attgtgacggccttctatgaaggcgtctatgatgtgctgatctcgaccacgattgtggaa
agtggcttggacattccccgcgccaatacgctgattacttggcgcgccgatatgtttggc
ttggcgcaaatgtatcaattgcgcggtcgggttggccgctccaagacccgcgcttatgcc
tatctgacggtgccggccgaaaagcccattacaccaagcgccgaaaagcgcctgaagatc
ctacaatcgctcgacagtcttggcgctgggttccaattggccagccatgatctcgacatg
cgtggcggcggcaacctcttgggcgaagagcaatcgggcaatattcgcgaggtcggtgtc
gaactgtatcagcaaatgctggaagaggccgtcgccagcctgcaggatggcggcgaagtc
gtctcggcgcggtcttggtcgcctgcgatcaatctgggggtcgcggttttgatcccagaa
gactatgtggcagacctcaatgtgcgcctgtcgctctatcgccgcttgagcgagctggag
agcgatgccgaccgcgacagctatgccgcagaactggccgaccgctttggccccttgcca
gaagaagcgcggcaattgatccagattgcgggcgtcaaagcactgtgccgcaaagcccat
atcgccaagctggatgccgggccaaaaggggctgtgctgactttccgcccagaatctgcg
cccgacccgatgaagctggtggcagccgtgcaaaagcagcctgcgctgttccgcttgcgg
ccagacggcaagatggtggtcaatggcgattggtctacccccgaacaacgcctcaaaggt
gcccgccgcgccgctgccttcttggctgcagaaatggggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (36)   

Download RDF
DBGET integrated database retrieval system