KEGG T01359: Hbor

Halogeometricum borinquense: Hbor_16640

Entry

Hbor_16640 CDS T01359

Definition

ATP-dependent DNA ligase i

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

hbo Halogeometricum borinquense

Pathway

hbo03030	DNA replication
hbo03410	Base excision repair
hbo03420	Nucleotide excision repair
hbo03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:hbo03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:hbo03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:hbo03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:hbo03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Nop14 CDC45

Other DBs

NCBI-GI:

313126407

NCBI-GeneID:

9993483

UniProt:

E4NLM9

Position

complement(1591375..1593231)

AA seq 618 aa
MQFAEFAARASEIEAEPADLATVALVRDLFCDAGDDLPVVTRFVQGRVFPAWDSTTLDIG
PRLLREAIARAAGQNVTADDVEDRLADAGEIGSVAAAYDFGGQQGLAAFSGGTNDGLTVN
EVDETLRDLAAASGPGSEDRKLNTLFGLFNRASSSEAKYLARLVLGEMRIGVGAGTVRDA
VAEAFLADFESATEESEDDEGGPKDDDAEDRSKDDDAEDRPKDDDTEDTADDADEPTTYA
TDEQLAAVERALQVSNDYGMVAVTARDEGKEGLKAVHLEVGRPVQAMLAQAGTVTDALDE
WDEAAVERKFDGARVQVHVAPDDASADDGEDVSLYSRNMDDVTDALPEIVEFVEDHVDVP
VILDGEVVAVDDDGAPLPFQEVLRRFRRKHDVGRMREEVRVELHAFDCLHADSEDLLDAP
VTERHARLAEVLADTNAVSDLLVSEDADEIAAFEEASLDAGHEGIMLKNPDSTYSPGNRG
KNWLKRKPDVETVDLVVTGAEWGEGRRANHLGTFLLSARDESGDGDYATIGKVATGITDE
ELAELSDLLEPEIVSEDGQTVELNPSVVFEVGYEEIQRSPTYSSGYALRFPRFIAVREDK
TPDDADSLDRIERLAESQ

NT seq 1857 nt +upstreamnt +downstreamnt
atgcagttcgccgagttcgccgcgcgggcgtcggaaatagaagccgaacccgcagacctc
gccaccgtcgcgctagtccgtgatctgttttgcgacgccggagacgacctccccgtcgtc
acacggttcgtccaaggccgcgtcttcccggcatgggactcgacaacgctcgatatcggg
ccgcgactcctccgcgaggccatcgcgcgcgcggccgggcagaacgtcacggccgacgat
gtcgaggaccgactcgccgatgcaggtgaaatcggcagcgtcgctgcggcgtacgacttc
ggcggccaacagggactcgccgcgttctctggcggcactaacgacggtctgacggtcaac
gaggtggacgaaacgcttcgtgacctcgcggccgcctccggacccgggagtgaggatcga
aagctgaacacgttgttcggcctgttcaaccgcgcgagttcgtcggaagcaaagtatctc
gcacgtctcgtcctcggcgagatgcgtatcggcgtcggagcgggaaccgtccgcgacgcc
gttgccgaagcgttcctcgctgacttcgaatcggcgacggaggagagcgaagacgacgaa
ggcggaccgaaagacgacgatgccgaagacagatcgaaggacgacgatgccgaagataga
ccaaaggacgacgataccgaagacactgcggacgacgccgacgaaccgacgacgtacgcg
accgacgagcaactggccgccgtcgaacgcgccctccaagtgtcgaacgactacgggatg
gtcgccgtcacggcccgcgacgaaggcaaagaagggctgaaagcagttcatctcgaagtc
ggccgccccgtgcaagcgatgctggcacaggcagggacagtgaccgacgccctcgacgaa
tgggacgaggcggcggtggaacgaaagttcgacggcgcgcgcgtgcaggtccacgtcgca
cccgacgacgcgtccgcggacgacggcgaagacgtgtcgctgtactcccgtaatatggac
gatgtaacggatgcgcttcccgaaatcgtagagttcgtggaggatcacgtggacgtgccg
gtgatcctcgacggcgaggtggtggcggtagatgacgatggcgcaccgcttccgtttcag
gaggttctccgccggttccgtcgcaaacacgacgtgggtcggatgcgcgaagaggtgcgc
gtcgaactccacgcgttcgactgtctacacgccgacagcgaggacttgctcgatgcgccg
gtgacggaacgacacgcccgactcgcggaggtgctggcggacaccaacgccgtctcggac
ttgctcgtctccgaggacgccgacgagatagccgccttcgaggaggcgtcgcttgacgcc
ggccacgaagggatcatgctgaaaaaccccgattcgacgtactcgcccggaaatcgcggg
aagaactggctgaaacgaaagcccgacgtagagacggttgacctcgtcgtgacgggtgca
gagtggggagagggccgccgcgcgaaccaccttggaacgttcctcctctccgcgcgcgac
gagagcggcgacggcgactacgccactatcgggaaggtagcgacgggcatcaccgacgag
gaactggccgagttgtccgatctcttggaaccagaaatcgtcagcgaggacggacagacg
gtcgaactgaatccctcggtcgttttcgaggtcggctacgaagagatacaacgctcgccg
acgtactcatcggggtacgcgcttcggttcccgcgctttatcgccgtccgagaggacaag
acgccggacgatgccgactcgctggatcgaatcgagcggttggccgagtcgcaatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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