KEGG   Hevea brasiliensis (rubber tree): 110638543
Entry
110638543         CDS       T05150                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
hbr  Hevea brasiliensis (rubber tree)
Pathway
hbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110638543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hbr03041]
    110638543
   03009 Ribosome biogenesis [BR:hbr03009]
    110638543
Enzymes [BR:hbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110638543
Spliceosome [BR:hbr03041]
 Complex A
  U2 snRNP components
   U2 related factors
    110638543
 Complex B
    110638543
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    110638543
Ribosome biogenesis [BR:hbr03009]
 Eukaryotic type
  90S particles
   Helicases
    110638543
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 AAA_19 nSTAND3 ABC_tran SRP54 PhoH AAA_30 Flavi_DEAD T2SSE FtsK_SpoIIIE TsaE AAA_7 UvrD-helicase RsgA_GTPase
Other DBs
NCBI-GeneID: 110638543
NCBI-ProteinID: XP_021644825
Position
Unknown
AA seq 731 aa
MGTERKRKVSLFDVVDETSISAKKSKTNGGGGAAINNNGNNDNLINRWTGKPYSQRYYEI
LEKRTSLPVWQQKEEFLTALKKNQVLVLVGETGSGKTTQIPQFVLESIDIETPDKRRKMM
IGCTQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRSDLKLVVMSATLEAEKFQGYFNDA
PLMRVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHVYEPPGDILVFLTGEEEIEDACRK
ITKEVGNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLVEGGPAGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFHQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMGKMLVVSHEFNCSNEILSISAMLSVPNCFIRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFINHRALKAADNVRQQLARI
MARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLDNFPNCEAKRALERLYRKR
EREKEESKNRK
NT seq 2196 nt   +upstreamnt  +downstreamnt
atgggtacggagaggaagagaaaagtgagcttgtttgatgtggtggacgagacttcgatc
tcggcgaagaaatcgaaaacaaacggcggtggtggagcggcgataaacaacaacggaaac
aacgacaatttgattaatcgttggactgggaagccatattcacagaggtactatgaaata
ttggaaaagaggacaagtctgcccgtttggcaacaaaaagaggagttcttgacggctttg
aagaaaaatcaggtccttgttcttgttggtgagactggtagtggaaaaactactcagatt
cctcagtttgttttggaatccatcgacatagaaacccctgataaacgtaggaagatgatg
attggatgcacccagcctcgtagagtggctgcaatgtctgtttctcgacgtgtggctgag
gagatggatgtgaatattggtgaagaggttggttatagcatacgttttgaggattgcagc
agtgcaagaacagttttgaagtatttaactgatggtatgcttttaagagaagcaatgact
gatcctcttttggagcgatacaaagtcataattcttgatgaagctcatgaaagaactttg
gcaacagatgtgctgtttggacttcttaaagaagttttaagaaatagatctgatctgaag
ctagttgttatgagtgcaacactagaggctgagaagtttcagggttattttaatgatgcc
cctctgatgagggttcctggtagacttcatccagtggagatcttctatacccaggaacct
gaaagggattaccttgaggcagcaattcggacagttgtccagatacatgtgtatgagcct
cctggggacatacttgttttcctcacaggtgaggaggagatagaagatgcgtgccggaaa
ataacaaaagaagttggaaacatgggggatcaggtggggccagtgaaagtagtgcctctg
tattcaactcttccacctgccatgcagcagaaaatttttgaacctgcaccacccccattg
gtagagggtggccctgctggtaggaagattgtagtttcaacaaacatagcagaaacttct
ttgactatagatggcattgtttatgttatcgacccaggttttgccaagcaaaaggtttat
aacccacgagtgcgtgttgaatccttgttggtttccccaatatcaaaggcaagtgctcat
cagaggtcaggtcgtgctggaagaactcagccaggcaaatgttttagactttacacggag
aaaagttttcatcaagatcttcagccacagacttatccggaaatactgcgatcaaacctt
gcaaatacagttctaacactgaagaaacttggaattgatgatctggtgcattttgatttt
atggacccaccggctcctgagacattgatgcgagcattagaggtgctaaattacttggga
gcattggatgatgatggaaacttgacaaagcttggggaaatcatgagtgagtttcctttg
gatcctcagatgggaaagatgctggttgttagtcatgaattcaactgctcaaatgagatt
ttgtcaatttctgctatgctttcggtacccaattgctttatccgccctagggaggctcaa
aaggctgctgatgaagcaaaagctaggtttgggcacatagatggggatcatctgacgctg
ttgaatgtgtaccatgcgtacaagcagaacaatgaggatccatcttggtgctatgaaaat
tttatcaaccatcgagctctcaaggctgccgataatgtcagacaacagcttgcacgcatc
atggcaaggtttaaccttaagttatgcagcaccgacttcaacagccgcgactactatgtc
aacataagaaaggctatgctagctggatattttatgcaggttgctcacctggaacgcact
gggcactacctgacggtgaaagacaaccaagtggtgcatttacatccttcaaattgtctg
gatcacaagccagagtgggttatttacaatgagtatgtcctaacgagccggaattttatc
cgtacggtgacagatattcgtggtgaatggctagtagacgtagcaccacactactatgat
ttagacaacttcccaaattgtgaggccaagcgagctcttgagaggctttatagaaagcgg
gagagagagaaggaagagagcaagaacagaaagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (19)   
   Pfam (19)   
All databases (38)   

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