KEGG   Helicobacter pylori PeCan18: HPPC18_01715
Entry
HPPC18_01715      CDS       T02036                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hca  Helicobacter pylori PeCan18
Pathway
hca03410  Base excision repair
hca03430  Mismatch repair
hca03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPPC18_01715
   03430 Mismatch repair
    HPPC18_01715
   03440 Homologous recombination
    HPPC18_01715
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hca03400]
    HPPC18_01715
DNA repair and recombination proteins [BR:hca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HPPC18_01715
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HPPC18_01715
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPPC18_01715
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB Fe-S_biosyn
Other DBs
NCBI-ProteinID: AFI02129
UniProt: I0EGR0
Position
complement(347575..349125)
AA seq 516 aa
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFGIAPLINSAGRMQDAKMALDFLSTNNFQDSHSLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILSFCEKEPPLTLA
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQILRFKDKECVKEAIY
FNADRFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttattcaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcgcaaacacagagattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattttttgaaagcctaaattataagcatgttcgcatt
gcaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagcgcctttgaagccgcacgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcagtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtagcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgcttagcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcaatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttggtatcgctcccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcacgaataattttcaagatagccattct
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggttggcgaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctctctctttgaaacttta
gaaaattttgattttaaaatcctatctttttgtgaaaaagaaccccctttaacgctcgca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaaccctgagcctttattccaggcacaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaaattctgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacgctgatcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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