KEGG   Helicobacter cetorum MIT 00-7128: HCW_08625
Entry
HCW_08625         CDS       T02032                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hce  Helicobacter cetorum MIT 00-7128
Pathway
hce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HCW_08625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hce03400]
    HCW_08625
DNA repair and recombination proteins [BR:hce03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HCW_08625
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HCW_08625
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 SWI2_SNF2 Microtub_bd Kinesin DUF87 DUF5923 AAA_7 UBA TsaE AAA_22 Enkurin
Other DBs
NCBI-ProteinID: AFI04980
UniProt: I0EPW1
Position
complement(1906426..1908408)
AA seq 660 aa
MSLFELKSHYAPAGDQPQAIEKLTKSLKAKNQYQTLVGVTGSGKTYTMANIIAKVNKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKPFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMIEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKLPGETPFCLFDYLGIFNREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKYDEFINKNCQFLFVSATPNKLELELSKNNVAEQIIRPTGL
LDPNFEVRDSDKQVQDLFDEIKLVIERDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITTYRRTKQEEFNKLHNITPKSVSRTLEAELK
LRDDETKIALAKALKKDKMPRSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLKTL
NT seq 1983 nt   +upstreamnt  +downstreamnt
atgtcattatttgaattaaaaagccattatgcaccagcgggcgatcagccccaagcaata
gaaaagcttactaaaagcctaaaagctaaaaatcaataccaaactctagtgggcgttaca
ggaagcggtaagacttacacgatggcaaatatcatcgctaaagtcaataagcccaccttg
ataatgagccataataaaaccttgtgtgcacagctctatagcgagtttaaggcgtttttt
ccacataatagagtggagtattttatctcacactttgattactaccagcctgagagctac
attcctagaagagatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttaagattaagtgcaaccacttcgcttctaggttatgatgatgtgatagtgattgctagt
gtttcagctaattatggtttgggtaaccctgaagaatatttgaaagttatggaaaaaatc
aaagtgggcgaaaaacgagcctacaaaccctttttattaaagcttgtagaaatgggctat
agtcgtaatgaagtggtgtttgatagggggagctttagagcgacaggtgaatgcgtggat
atttttccggcttataatgatgcagaatttattaggattgaattttttggcgatgagata
gagagaattgcggtatttgatgcattagaaaggaatgaaatcaagcgtttagattctgtc
atgctttatgcggcaagtcagtttgcagtagggagtgagagattaaacttagccattaaa
agcattgaagatgagttagctttaagattgaagttttttaaagagcaagataaaatgatt
gaatacaaccgccttaagcaacgcacagagcatgatttagaaatgattagtgcgacaggt
gtgtgtaagggtattgaaaattatgcacgccattttaccggtaaattgcctggcgaaacc
cctttttgtttgtttgattacttagggatttttaatagggagtttttagtcattgttgat
gaaagccatgtgagtttgccacaatttgggggcatgtatgcaggggatatgagtagaaaa
agtgttttagtagaatatggctttagattgccatctgctttggataatcgccctttaaaa
tacgatgagttcatcaataaaaattgtcaatttctctttgtgtccgctacgcctaataaa
ctagaattagagctttctaaaaacaatgtggcagagcaaatcattcgccctacagggctt
ttagaccctaattttgaagtgcgagatagcgataaacaagttcaagatttatttgatgaa
atcaagttagtaatagagagagatgaaagagtgcttattacaacgctcactaaaaaaatg
gcggaagaattgtgtaaatactatgctgaatggggcttgaaggtgcgttatatgcatagt
gaaattgatgcgattgagagaaaccatattatccgctctttaaggcttaaagaatttgat
gttttaatagggattaatctcttaagagaagggctagacttacctgaagtttctttagtg
gcgattatggacgcagataaagaagggtttttaagaagcgaaacaagtctcattcaaacc
atggggcgagctgcaagaaatgctaatggtaaggtcttattatatgctaaaaaaattact
caaagtatgcaaaaagcctttgaaattaccacttatagacgcactaagcaagaagagttt
aacaaactccacaatatcactccaaaaagtgttagccgaactttagaagcggagctgaaa
ctaagagatgatgaaactaaaatcgcccttgctaaagctttgaaaaaggacaaaatgcca
agaagtgaaagagaaaaaatcatcaaggaattagataaaaaaatgcgagagtgtgcgaag
aatttggattttgaagaagctatgcgtttgagagatgaaatcgctaaattaaaaacgctt
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (25)   

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