KEGG   Helicobacter cetorum MIT 99-5656: HCD_03455
Entry
HCD_03455         CDS       T02033                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
hcm  Helicobacter cetorum MIT 99-5656
Brite
KEGG Orthology (KO) [BR:hcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hcm03032]
    HCD_03455
   03400 DNA repair and recombination proteins [BR:hcm03400]
    HCD_03455
Enzymes [BR:hcm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     HCD_03455
DNA replication proteins [BR:hcm03032]
 Prokaryotic type
  DNA Topoisomerases
   HCD_03455
DNA repair and recombination proteins [BR:hcm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HCD_03455
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim LysW-like_globular HMBD zinc_ribbon_2 zf-ribbon_3 DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: AFI05707
UniProt: I0ERY8
Position
729185..731386
AA seq 733 aa
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDEKGFTPNYIVDKDH
KELVKHIIELSKKATATYIATDEDREGEAIGYHIACLIGGELESYPRIVFHEITKNAILN
ALENPRQIDMDKVNAQQARRFLDRIVGFKLSSLIASKISKGLSAGRVQSAALKLVIDRER
EINAFKPLTYFTLDALFESNLEAQLISYKGNKLKAQELIDKEQALAIKSELEKENYIISS
IVKKPKKSSTPPPFMTSTLQQSASSLLGFSPTRTMSIAQRLYEGVATPQGIMGVITYMRT
DSLNIAKEAIEEARAKILKDYGNNYLPPKAKVYTSKSKSAQEAHEAIRPTSISLEPNALK
DYLKPEELKLYTLIYKRFLASQMQDAEFESQSVILACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLDNNTHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEDELDNIAQNKANYQQV
LKDFYYPFMDKIEAGKKNIISQKVSEKTGEFCPKCGAELVKKSSRYGEFVACSAYPKCKY
IKQEENTSDETPNQTCEKCGGEMVQKFGRNGAFLACNNYPECKNTKSLKNAPSSQEILEG
VKCPECGGDIALKRSRKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERVYRKKNAQ
ECIKCKERVFLEE
NT seq 2202 nt   +upstreamnt  +downstreamnt
atgaagcaccttattattgtagaatcccctgcaaaagccaaaaccataaagaatttttta
gacaaaaattatgaagtcatcgcttctaaagggcatgtgagagatttatccaaattcgct
ttaggaatcaaaattgatgaaaaaggtttcactcctaattacatcgtggataaagaccat
aaagagcttgtcaaacacattatagagctttctaaaaaagcaacagccacttacatcgcc
accgatgaagatagagaaggcgaagccataggctatcacatagcttgcttaattgggggc
gaattagagagctatcctagaattgtctttcatgagattactaaaaatgcgattttaaac
gccctagaaaacccacgccaaattgatatggataaggtcaatgcccaacaagccagacgc
tttttagacagaatcgtaggctttaaactcagctcattgattgcatcaaaaattagcaag
ggtttgagtgctggaagagtccaaagtgcggccttaaagcttgtgattgacagagagaga
gaaattaatgcctttaaacctttaacctatttcacgctagacgctttgtttgagtctaat
ttagaagctcaactaattagctataagggcaataagcttaaagcccaagagcttatagac
aaagagcaagcgcttgctataaaaagcgaattagaaaaagaaaattacatcatttctagc
attgttaaaaaacctaaaaaatcttctaccccacccccttttatgacttccaccttacaa
caaagtgcctcaagtcttttaggcttttcgcctacaagaacgatgagtatcgctcaaaga
ttgtatgagggggtagcaaccccacaaggcattatgggtgttatcacttatatgagaacg
gatagcctaaatatcgccaaagaggcgatagaagaggctagagccaaaattctaaaagac
tatggcaataactacttgccccccaaagccaaagtctatacgagcaagagtaaaagcgct
caagaggcacacgaggccattagacccacttcaatttctttagaaccaaacgccttaaaa
gactatctcaaacctgaagaattgaaactctacacgctcatttacaagcgctttttagcc
tctcaaatgcaagatgccgaatttgaaagtcaaagcgtgattttagcttgcgaaaaaggc
gaatttaaagctagtggcaggaagctcctttttgatggctattataaaatcttaggcaat
gatgataaggacaaattgctccctaatttaaaagaaaatgaccccattaaattagaaaaa
ttagacaataacacgcatgttacagaaccccccgctcgctattcagaggcaagtttaatc
aaagtcttagaaagcttaggcataggcagacctagcacttatgcgcctactatttcgctt
ttacaaaatagagattacatcaaagtagaaaaaaagcaaatcagtgctttagagagtgcg
tttaaagtgatagaaattttagaaaagcattttgaagaaatcgtggattcaaaattcagc
gcctctttagaagatgagctggataatatcgctcaaaataaagccaattaccaacaagtt
ttaaaagatttttactatccctttatggataaaattgaagccggaaaaaagaacatcatc
tcgcaaaaagtcagcgaaaaaaccggcgaattttgccctaaatgcggagcagaattagtc
aaaaagagtagccgctatggagagtttgtcgcttgtagtgcttatcctaaatgcaaatac
atcaagcaagaagaaaatacaagtgatgaaacccctaatcaaacatgcgaaaaatgtggg
ggggaaatggtgcaaaaatttggcagaaacggagcgtttttagcttgtaacaactaccct
gaatgcaaaaacaccaaatctttaaaaaatgcccctagtagccaagagattttagaaggc
gtgaaatgcccagaatgcgggggtgatattgctttaaagcgtagcagaaaaggctcattc
tatgggtgcaataattaccctaaatgcaactttttatccaaccataagcccataaacaag
cgttgtgagaaatgccattatttaatgagtgaaagagtctatcgcaagaaaaacgcccaa
gaatgtatcaaatgtaaagagcgagtgtttttggaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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