KEGG   Helicobacter pylori HUP-B14: HPB14_06845
Entry
HPB14_06845       CDS       T02035                                 
Name
(GenBank) ATP/GTP binding protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
hcn  Helicobacter pylori HUP-B14
Pathway
hcn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hcn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPB14_06845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcn03019]
    HPB14_06845
Messenger RNA biogenesis [BR:hcn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPB14_06845
SSDB
Motif
Pfam: Lactamase_B RMMBL RNase_J_C Lactamase_B_2
Other DBs
NCBI-ProteinID: AFI08041
Position
complement(1408636..1410705)
AA seq 689 aa
MTDNNQNNENHENSSENSKADEARAGAFERFTNRKKRFRENAQKNAESSNHEAPSHHKKE
HRPNKKPNNHHKQKHAKTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKELKKGVEANN
KIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEGLF
GVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSKF
DEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKI
DHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRV
IMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANEVA
KYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLN
FLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAIAC
GVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASLGV
FVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLEVLLKSSNAEILNNPKKL
EDHTRNFIRKALFKKFRKYPAIICHVHAT
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgactgataacaaccaaaacaatgaaaaccatgaaaacagcagtgaaaattcaaaagct
gatgaggcgcgagccggagcgtttgagcgcttcaccaaccgcaaaaagcgtttcagagaa
aacgcgcaaaagaacgcagagtcttcaaaccatgaagcgccttcgcaccataaaaaagag
catcgccccaacaaaaagccaaacaaccaccacaaacaaaaacatgccaaaacacgaaat
tacgccaaagaagaattggataacaacaaagtagagggcgttacggaaattttgcatgtg
aatgagagggggactttaggctttcataaggagttaaaaaagggcgttgaagcgaataac
aagatccaagtggagcatttaaacccgcattataagatgaatttaaactctaaagcgagc
gttaaaatcacgcctttagggggattgggcgagattggggggaacatgatggtcattgaa
accccaaaaagcgcgatcgtgattgatgcgggcatgagcttccctaaagaagggcttttt
ggcgtggatattttaatcccggatttttcctatttgcaccaaatcaaggacaaaatcgcc
ggtattatcatcacccatgcccatgaagatcacataggggccacgccttatttgtttaaa
gagttgcaattccccctttatggcacgcctttgagtttggggctgattgggagcaagttt
gatgaacatggtttgaaaaaataccgctcgtattttaaaatcgtagaaaagcgttgcccc
attagcgtgggcgaatttatcattgaatggatccacatcacgcattctatcattgacagc
agtgctttagcgatccaaactaaagccggaacgatcatccacaccggcgattttaaaatc
gatcacaccccggtggataatctgcccacggatttgtatcgtttagcgcactatggcgaa
aagggggtgatgcttcttttaagcgattccaccaactcccataaatccgggaccacgccg
agtgaaagcaccatagcgccggcttttgataccctttttaaagaagcgcaagggagggtg
attatgagcacattctctagcaatatccaccgggtctatcaagccatccaatacggcatt
aaatacaaccgcaagatcgctgtgatcgggcgctctatggaaaaaaacctagacatcgct
agagaattgggctatatccatttgccttatcaatcttttattgaagccaatgaagtcgct
aaatacccggataatgaagtcttaatcgtaacgaccggctcacaaggcgaaaccatgagc
gcgctttatcgcatggcgactgatgagcaccgccacatttctatcaaacccaacgattta
gtcatcatttccgctaaagccattcctggcaatgaagcgagcgtttcagcggtgttgaat
ttcttgatcaaaaaagaagccaaagtggcttatcaggaatttgacaatatccatgtgagc
gggcatgccgcccaagaagagcaaaagctcatgctaagactcattaagcctaagtttttc
ttacccgtgcatggggaatataaccatgttgcgcgccacaagcaaaccgctattgcttgc
ggagtgcctgaaaaaaatatctatctaatggaagatggcgatcaggtggaagttggccct
gcgttcattaaaaaagtcggcaccattaaaagcggtaaaagctatgtggataaccaaagc
aatttgagtattgacactagcatcgtgcaacaaagagaagaagtcgctagcttgggggtg
tttgtcgctacgatttttgtgaataaaaacaaacaagcgcttttagaaagctctcaattt
tccagtttagggcttgtgggctttaaagatgaaaagcctttgatgaaagaaattcaaggg
ggcttagaggtgttgttgaaatccagcaacgccgaaattttgaataaccctaaaaaatta
gaagatcacactcgtaatttcatcagaaaagcgctctttaaaaagtttagaaaatacccg
gctatcatttgtcatgtccatgctacctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system