KEGG   Halomonas chromatireducens: LOKO_02230
Entry
LOKO_02230        CDS       T04292                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hco  Halomonas chromatireducens
Pathway
hco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOKO_02230 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hco03019]
    LOKO_02230 (rnr)
   03016 Transfer RNA biogenesis [BR:hco03016]
    LOKO_02230 (rnr)
Enzymes [BR:hco01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LOKO_02230 (rnr)
Messenger RNA biogenesis [BR:hco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LOKO_02230 (rnr)
Transfer RNA biogenesis [BR:hco03016]
 Prokaryotic type
  tRNA degradation factors
   LOKO_02230 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 OB_Dis3 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AMD01293
UniProt: A0A0X8HER3
Position
complement(2362682..2365102)
AA seq 806 aa
MTHWTLSDDPHASREAHKYDKPAPSREYLLSRMEEHGKPVSHENMSRMLGLDDEELQEAV
RRRLAAMERDGQVLRNRAGAYALIDKLDLIKGKVLGHRDGFGFLLRDDGKKPDLVLPPRQ
MRRVFHGDAVLARVSGRDRRGRDEATIAEVLSRNTQTIVGVYRANTSEFGVLIPENPRIT
QEVIIPHSACGGAKDGQVISAKIVQQPETRVQPVGEVVEVLGERMDPGMEIDIAIRSYEI
PSEFPPDVQDEIAGMSAEVVDADKQHRIDLRDVPFVTIDDESAKDFDDAVCAWKTKSGSW
KLLVAIADVSHYVRPGSALDEEAITRGNSVYFPGQVVPMLPELLSNGLCSLNPSVDRLAL
VCEMNISQSGAISRYRFYEAVFQSHARLTYNKVAAILDEESAEGDALREEYRALVPSLQN
LHSLYRLLREARVARGAIDFETTETAILFNEERKIEKIVPRSRNDAHKIIEECMLAANVA
TARFLDKHDLPALYRIHEKPSPERLDKLRLFLNELGLSLGGGDDPSPEDYRDLAEVIKDR
PDSDVIQTVMLRSMSRAVYSPHNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTATVLRAEGGKVEPPSKWCPYTFEQMLELGEHCSMTERRADDATRDVEDWLKCEFMSD
KLGEVYEGTIASVTQFGIFVRLDEVYVEGLVHVTSLPSDYYHYEPEKHRLKGERTGMSYR
LGDGVTVQVARVDLDDRKIDFALEDEKPRPKRQPRKRRGAGESSNATPPAAGSGKGDAKV
GKDDAKGGKGKGGKRRRGPRKPKARS
NT seq 2421 nt   +upstreamnt  +downstreamnt
atgacccactggacgctcagcgacgacccgcacgccagccgcgaggcccataagtacgac
aagcccgcccccagccgcgaatacctgctgtctagaatggaagagcacggcaagccggtt
tcccatgagaacatgagccgtatgctgggcctcgacgacgaggagctccaggaggcggtg
cgccgtcggcttgcggccatggagcgtgacggccaggtgctgcgcaaccgcgccggtgcc
tacgcgttgatcgacaagctggacctgatcaagggcaaggtgcttggccatcgcgatgga
ttcggcttcctgcttcgtgacgatggcaagaagcctgacctggtcctgccgccacgccag
atgcgccgtgtcttccatggcgatgccgtgctggccagggtcagcggtcgcgaccggcga
ggacgcgacgaggcgacgatagccgaggtgctgtcccgtaatacgcagaccatcgtcggc
gtctaccgcgccaatacttccgagttcggcgtgctgattccggagaatccgcgcattacc
caggaagtgatcattccccatagtgcctgtggcggcgccaaggatggacaggtgatttcg
gcaaagatcgtccagcagccggagacccgggtgcagccggtcggtgaggtggtcgaggtg
ctcggcgagcgcatggatccggggatggagatcgatatcgccattcgtagctacgagatc
ccctcggagttcccgccggatgtacaggatgagatcgccgggatgtcggccgaggtggtg
gatgccgacaagcagcatcgcatcgatctgcgcgatgttcctttcgtcaccatcgacgat
gagtcggccaaggatttcgacgatgccgtctgtgcctggaagacgaagtcgggcagttgg
aagctgctggtggccattgccgacgtctcgcactatgtgagacccggcagcgccctcgac
gaggaggcgatcacccgcggcaattcggtctatttccccggccaggtcgtgcccatgctg
ccggagctgctctccaacgggctctgctcgctgaaccccagcgtcgaccgactggcgctg
gtctgcgagatgaatatctcccagtccggtgccatcagtcgctatcgcttctacgaggcg
gtattccagtcgcatgcgcggctgacctataacaaggtcgccgccatcctcgacgaggag
agcgcggagggggatgcgctgcgcgaggagtatcgcgccctggtgccttcgctgcagaac
ctgcattcgctctatcggctgctgcgcgaggcccgcgtggcccgtggcgccatcgatttc
gagaccaccgagacggcgattctcttcaacgaggagcgcaagatcgagaagatcgtgccg
cgctcgcgcaacgatgcccacaagatcatcgaggagtgcatgctggcggccaacgtggcc
accgcccgcttcctcgacaagcacgatctgccggcgttgtatcgtatccacgagaagccc
tcgccggagcgcctggataagctgcgcctgttcctcaacgagctggggctgtcgctgggc
ggtggtgacgacccgagcccggaggattatcgtgacctggccgaggtgatcaaggatcgt
cccgattccgacgtgatccagaccgtgatgctgcgctccatgagccgggcggtctattcg
ccgcacaatgaaggccactttggcctggcctatccggcctatgcccacttcacatcgccg
atccgccgctatcccgacctgctggtacaccgggccatccgctctgtcattcgtgggccg
cgccagaccgccacggtgctgcgtgctgaaggcggcaaggtggagccgcccagcaagtgg
tgtccctataccttcgagcagatgctcgagctgggggaacactgctccatgaccgagcgt
cgcgccgatgacgccacccgggacgtcgaggactggctgaagtgcgagttcatgtccgac
aagctcggcgaggtctacgagggcaccatcgcctcggtaacccagttcggcatcttcgta
cgcctcgatgaggtctatgtggaagggctggtgcatgtcacatcgctgccctcggactat
taccactacgaaccggaaaagcaccgcctcaagggcgagcgtaccggcatgagctaccgt
ctgggcgacggtgtcaccgttcaggtggcgcgtgtcgaccttgatgaccgcaagatcgat
tttgccctggaggacgagaagccgcgccccaagcgacagcctcgcaaacgccgaggtgcc
ggcgagtcgagcaacgccacgccgccggcggccggcagtggtaaaggtgatgccaaggtc
ggcaaggatgatgccaagggcggcaagggcaagggcggcaagcgtcgtcgcggcccgcgc
aagcccaaggcacgcagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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