KEGG   Halomonas chromatireducens: LOKO_03290
Entry
LOKO_03290        CDS       T04292                                 
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
hco  Halomonas chromatireducens
Pathway
hco03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    LOKO_03290 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hco03400]
    LOKO_03290 (sbcB)
Enzymes [BR:hco01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     LOKO_03290 (sbcB)
DNA repair and recombination proteins [BR:hco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     LOKO_03290 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LOKO_03290 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LOKO_03290 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AMD02336
UniProt: A0A120JWQ6
Position
complement(3508088..3509578)
AA seq 496 aa
MAKPDAAPMTFLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPVELFCKPADDYLPH
PQACLITGITPQQARRRGLPEAEFAGRVHALMSEPGTCALGYNSLRFDDEISRCLFYRNL
LDPYSREWQNGNSRWDLIDAVRAFHALRPAGIEWPRREDGSPSFRLEDLTAANGIAHEGA
HDAVADVRATIALAKLLRGCNPRLFDHLLALRKKREVALRLDVPGRKPVLHISRRYPASR
GCSALVIPLAEHPTNPNGVIVYDLSVDPEPLLTLSAEQIRQRIFVSNDDLAEGEARIPLK
VIHINRSPVILPASALKDVDGPRQGEYGDIVERLGLDLAACRTHWKRLAGSADAASKAVE
AFVAPPPEGPQDPDLMIYSGGFFSAADRQQMQRVRDTDPWDLVDARFAFQDGRLEEMLFR
YRARSFPETLSSEELVRWEAFRWERMNDSAVSGFTLKDFAREIERLNQVALSDRDRQVLE
ELVMHVEAMMPPQAFG
NT seq 1491 nt   +upstreamnt  +downstreamnt
atggcgaagcccgatgccgccccgatgacctttctctggcacgactacgagaccttcggc
gccgacccgcgtcgcgatcgaccctcgcagttcgctgccattcgcaccgacgccgacttc
aacgaaatcggcgagcccgtcgaactcttctgcaagcctgctgacgattatctgccgcac
ccccaggcctgcctgatcaccggcattaccccacagcaggcgcgccgtcgcgggctgccg
gaagccgagttcgcgggacgggtccatgctctcatgagcgagcccggcacctgcgccctg
ggctacaacagcctgcgtttcgacgacgaaatcagccgctgcctcttctatcgcaacctg
ctcgacccctattcccgggagtggcagaacggcaattcccgctgggacctgatcgatgcc
gtgcgtgccttccacgccctgcgaccggccggcatcgagtggccgcgtcgcgaggatggc
agccccagctttcggctcgaggacctgaccgctgccaatggcatcgcccatgaaggcgcc
catgatgctgtcgccgacgtgcgtgccactattgccctggcgaagctgctcagaggctgc
aatccgcgtctcttcgatcacctgcttgcgctgcgaaaaaagcgggaagtggcgcttcgt
ctcgacgtccccggccgcaagccggtactgcacatctcgcgccgctacccggcgagccgt
ggctgcagcgcactggtgatcccgcttgccgaacaccccaccaaccccaacggggtgatc
gtctatgacctctcggtcgatcctgaaccgctgctgaccctgagcgccgagcagattcgt
cagcgcatcttcgtcagcaacgacgacctggccgagggtgaggcacgtattccgctcaag
gtgattcacataaaccgcagtccggtgatcctgccggcgtcggccttgaaggatgtggat
ggcccccggcagggcgagtatggcgatatcgtcgagcgactggggctggatctggccgcc
tgtcgtacacactggaagcgcctggccggcagcgccgatgcggcgagcaaggccgtggag
gccttcgtggctccccctcccgaagggccgcaggaccctgatctgatgatctactctggc
ggttttttctcggcagccgatcgccagcagatgcagcgagtgcgcgataccgacccctgg
gatctggtggatgcccgattcgcctttcaggatgggcggctggaagagatgctcttccgc
tatcgagcccgcagctttccggagacgctttccagtgaagagctggttcgctgggaagcc
ttccgctgggagcgcatgaacgactcggcggtctccggctttaccttgaaagactttgcc
cgggagatcgaacggctcaatcaggtggcgctgagcgatcgcgaccgccaggtgctggag
gagctggtgatgcatgtggaggcgatgatgccgccccaggccttcggctag

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