KEGG   Hippocampus comes (tiger tail seahorse): 109515519
Entry
109515519         CDS       T04969                                 
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03008  Ribosome biogenesis in eukaryotes
hcq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    109515519 (xrn1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109515519 (xrn1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcq03019]
    109515519 (xrn1)
   03009 Ribosome biogenesis [BR:hcq03009]
    109515519 (xrn1)
   03016 Transfer RNA biogenesis [BR:hcq03016]
    109515519 (xrn1)
   03036 Chromosome and associated proteins [BR:hcq03036]
    109515519 (xrn1)
Messenger RNA biogenesis [BR:hcq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     109515519 (xrn1)
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     109515519 (xrn1)
Ribosome biogenesis [BR:hcq03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    109515519 (xrn1)
Transfer RNA biogenesis [BR:hcq03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    109515519 (xrn1)
Chromosome and associated proteins [BR:hcq03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    109515519 (xrn1)
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 109515519
NCBI-ProteinID: XP_019724924
Position
Unknown
AA seq 1676 aa
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNGITPGTEFMVRLQEQLKYFVHNKLSTDKLWQNVKIYLSGHETPGEGEHK
IMEFIRSETAKPLHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIHYEFSEVQHQLGSNYDLEQIIDDWILMSFLVGNDFIPHLPH
LHINHDALPLLYKTYINVLPGLDGYLNEKGHLNLGNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGRAAEMEAASKQTHKEEDCSLSLAESTSSDRAIDGAEVPPVEEDD
EEDDMFETEFRQYKRTYYMTKMGVDVVSDAFLSKQAKCYVEGIQWILHYYYHGVKSWSWF
YPYHYAPFLSDIRNISELKLTFELGEPFMPFQQLLAVLPAASMELLPECYRHLMTSDTSP
IIEYYPTDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMESCNSKLTKEEKARNHHSECAL
YTYEREKDYTYLSAIPQLFPNIIHCHVRKENIPLDAWQVPLSHTGRSVDRSALYFCGFPT
LHHIKHKFNMKKSGVLVFQQSSRGDNMMLEILPTQEKELLCDDVAEQVLGKSVFVNWPHL
EEARIIAVSDGDTRFSLEEPPGVQRVYRSHSTPPPTRVTYLSDKEQRDWVKDIQGITEHY
LKRKGIVVNQTTVLLYGQLLTGRKYIPKSNGVVELEKQWAKQVLPFAFQTVVQDIEAFYS
SVTCFKSLEDLYPPLSTVFMVGNPYYAAMGEVQDSSDVIKDGRVRVVFNVPHEPQLELLI
QNQHKYCVKYSPGYVVASRLGISSYLVSRFSGSIFIGRGSKKNPCGEHKANVGLNLKFNK
KNEEVPGYTKRTEKEWLYSAAVEELLAEYLERFAEVFDTVSRNSHDDVFYEDDIWPGEDN
GAEKVAEIVTWLKSHPVSSISRASCDLQVLDAAIVEKIEEAVEKAKVKKSSKKVRDTVKA
HLLFRPLEQQQGVVPDPLADYRLFDRVVNVRESFTVPLGLRGTVIGMKGADREDEVLYEV
LFDEDFPGGLNIRCASPRCYRLPPCALMNLSHGARTDPTSHKLTAVVKPQPAAAGGCNSH
PLAASLNHSPRSPFISAQHNDKHGEGKSAYRGSKNSSSKAPLQKQPDKSKEAYVNVWQSL
QDCAPSHQPPAHWQKNASVGLIRLLKKNEDANSLLPQQNTVHKTSTEFEDLIASLKISKD
RQETAENLPPAPSQTSAGQSDGPLSPQSFAMKGTMVLKEMLKIDGAGGGSPAPPETAHDH
KQNKRRKSKKLAAQMTVAHGERAPSSPPVPLNQSSKVAELACVCVALGVAPPEFSFLCNR
QGVVVCQVKLSNGLTVHGPRCHSENDAKEKAAFFALQRLNSLGSGFPVQPPLFHGVARLQ
SPAMRAMPPVYNQSGALLMPPRGYAPAAPIWGMPLPPHHQPFPHQNPPFYGAAGTVPGAA
KQQPVPTLPVGSHHQFIPLQVTKKRMSANKKPQDTREFYSAAQSLTGNPTAQRGQDTPPG
QSRCLRDDNAPPSASVSTTTPPRQNRPAAGHAPGSASKRKHRKLAVNFQAAQLSDQ
NT seq 5031 nt   +upstreamnt  +downstreamnt
atgggggtcccgaagttttatcgatggatttcagagcgttatccttgcctcagtgaagtt
gtcaaggagcatcagatcccagaatttgacaatctctatctggacatgaatgggatcatc
catcagtgttctcatccaaatgatgaagacgttcacttccgcatctctgaagagaaaatt
tttgcagacattttccattacttggaggtgctttttagaatcatcaagccacgcaaggtc
ttcttcatggcagtagatggtgtggcaccaagggcaaagatgaaccagcagagaggacgg
agatttcggtctgcaaaagaagcagaagagaaaataaaaaaagctctggataaaggagag
gtgttgcccacagaagctcgtttcgactcaaacggcatcaccccaggcacagagttcatg
gtgagactccaagagcagctcaagtattttgtccacaacaaactgtccaccgacaaactt
tggcagaatgtcaaaatctatttgtcaggtcatgagactcccggggagggcgagcataaa
atcatggaattcatacgttcagagactgcaaagccacttcatgaccccaacacccgccac
tgcttatatggccttgatgccgacctgatcatgttgggtttgaccagccatgagccaaat
ttctccctgctcagagaagaggtccgctttggaggaaagaaatcccagaaaaggataact
gcccctgaggagacaacgtttcatttgcttcacttgtctcttatgagggaatacattcac
tatgagttctctgaggttcagcatcagttgggttccaattatgacttggagcagataata
gatgactggattctgatgagcttcctcgtggggaacgacttcatccctcaccttcctcat
cttcacattaatcacgatgctctgccgttgttgtataagacttacatcaatgtgctaccc
ggcctagatggttatctgaatgagaagggccaccttaaccttggaaactttgagaaatac
ttggagaaactatctgagtttgatcgtgaacatttcagtgaggtgtttgtggacttgaag
tggtttgagagcaaagttggtaacaagtacctgaacgaggcggcgggccgtgcagcggag
atggaagctgccagtaaacagacccacaaggaagaggattgttctctctctctggcggaa
tccacgtcctctgatcgagcgatagacggcgcggaagtgcctcctgtcgaggaggatgac
gaggaagatgatatgtttgaaacggagttcagacagtacaagcgcacatactatatgacc
aagatgggggtggacgtcgtgtctgatgcttttctatccaagcaggccaaatgttatgtt
gaaggcatccagtggattctccactactattaccatggggtgaaatcctggagctggttt
tacccttaccactatgcgccgttcctgtccgacatcagaaatatttcagaattgaagttg
acctttgaactcggggaacccttcatgcctttccagcaactcttggcagtcttgcccgct
gccagcatggagctgttgcctgaatgttacaggcacctgatgaccagtgacacatcgccc
attattgagtattacccgacagacttcaaaacagacctcaacggcaaacagcaggagtgg
gaggccgtcgtgctcattcctttcatcgatgagaggtgtttgttagcagccatggagagc
tgcaattccaagttgaccaaagaagagaaagccaggaatcatcattcagaatgcgctctc
tatacgtacgagcgggagaaagactacacatacctctccgctattcctcagctcttccca
aacatcatccactgccatgtcaggaaagagaacattcctttggacgcttggcaagttcca
ctgagccacactggcaggagtgtggatcgctcggcgctgtatttttgtggcttccccacg
ctacatcatataaaacacaagttcaacatgaagaagagtggggtgcttgtattccagcaa
agtagcagaggtgacaatatgatgctggagatcctccccactcaggaaaaagaattgctt
tgtgatgacgttgctgaacaagtactggggaagtcggtgtttgtcaactggccacatctc
gaggaagcgcgcatcattgccgtgtcagatggagacaccaggttttctctcgaagaacca
ccaggggtccaacgagtctaccgcagtcattccacccctccccccaccagagtcacttac
ctctcagacaaggagcagagggactgggtgaaagacatccaaggaataacagaacactac
ctgaagaggaaaggcattgtcgtcaatcaaacaacggtgcttctatatggacagctgctg
acgggaagaaaatacatccccaaatcgaacggcgtggtggagttggagaaacagtgggct
aagcaggtccttccttttgcgttccagacggtggtccaggacatcgaggccttttattca
tctgtgacctgctttaagagcttagaagacctctatcctccactcagcaccgttttcatg
gtgggaaacccctactatgcagccatgggcgaggtgcaagattcgagtgacgtcatcaaa
gacgggcgtgtgcgtgtggttttcaacgtgccacatgagccccaactagagcttttaatc
cagaaccagcataagtactgcgtgaagtacagccccggctacgttgtggcatcccgtctt
ggaatcagcagctaccttgtgtcccgcttttccggaagcatcttcattggcagaggatcg
aaaaagaatccctgtggagagcacaaagcgaatgtcggcttgaacctgaagttcaacaag
aagaacgaggaggtccccggatacaccaagagaaccgagaaggaatggctttattccgcc
gccgtggaggagcttttagccgaatacctggaaagattcgcggaggtgtttgacacggtt
tcaagaaacagtcacgacgatgtgttctatgaagacgacatctggcccggagaagacaac
ggagcagagaaggtggctgaaatcgtgacgtggctgaaaagtcaccctgtcagctcaatc
agcagggcgtcatgtgacttgcaagtgctggacgccgcaattgtggagaaaattgaggag
gctgtggagaaagcaaaggtgaagaagagcagcaagaaagttcgcgacaccgtcaaggcg
catctcctctttcggcctttggagcagcaacagggggtggtcccggaccccttggccgac
tatcgcctctttgaccgcgtcgtcaacgtccgagagagcttcacggtgccgttgggtctc
cgaggcaccgtgatcggcatgaaaggagctgatcgtgaggacgaggttctctatgaggtg
ctgtttgacgaagactttccgggagggcttaatatcaggtgcgcatcgcctcgttgctac
cgccttcctccctgcgcgctaatgaatctgtctcacggcgcccgaacggatcccacgtcc
cacaaactcaccgccgtcgtcaaacctcagcctgccgccgccggcggctgcaactcgcac
cctctcgcggccagcctcaaccattccccacgttcgccctttatctccgcgcaacataac
gacaaacacggtgaggggaaatcagcctaccgaggcagcaaaaactcgagctcgaaggct
cctctccagaagcagccggacaagagtaaagaggcgtacgtgaatgtatggcagtctttg
caagactgcgccccttcccatcaacctcccgctcattggcaaaagaatgcctctgttggt
ctcattagattgttgaagaaaaacgaagatgccaattctcttttacctcagcagaacact
gtccacaagacgtcaacggagtttgaagacctgatagccagccttaagatctccaaggac
aggcaagagactgctgaaaatctacccccggcgccttcccaaacatccgccggccaatct
gatgggcctctatcaccacagtccttcgccatgaagggcaccatggtgttgaaggaaatg
ctgaagattgacggcgctggaggaggaagccccgcccctccggagactgcccatgaccac
aagcaaaacaagaggagaaagtccaaaaaattagcggcacaaatgacggttgcccatgga
gagagagcgccgtcgtctcctcccgtgccgctcaaccagtccagcaaggtggccgagctg
gcgtgcgtctgcgtcgccttaggcgtggcgccacccgagttcagctttctctgtaacaga
cagggtgtcgtcgtgtgtcaggtgaagctgtccaacggtttgaccgttcacgggcctcgg
tgtcactcggaaaacgacgctaaggagaaagccgccttctttgccttgcaacgactgaat
tccctgggatcgggtttccccgttcaaccgcccctgttccacggagtggcacgtttgcag
tccccggccatgagagccatgcctcccgtctacaaccagtcaggcgctttgctgatgccg
ccgcgaggttacgctcctgctgcccctatctggggaatgcctctgcccccccaccaccag
cctttcccccaccagaacccaccattttatggagctgccggaacagtccctggtgctgcc
aagcaacagccggtcccaactctgcccgtcggctcccatcaccagttcatcccattacag
gtgacgaaaaagcgaatgtcggccaacaagaagccccaagacaccagagagttttactcg
gcggcccaaagcctgaccgggaacccaaccgcacagagaggccaggacacacctccaggc
cagtctcgatgcctcagggacgacaacgctcctccatccgcgtcagtttccacgacgacg
ccccctcggcaaaataggccggccgcgggccacgcccctggctccgcctccaaaaggaag
cacaggaagctggctgtgaactttcaggcagctcagctgtcagaccagtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (63)   

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