KEGG   Halomonas campaniensis: FF32_09860
Entry
FF32_09860        CDS       T03198                                 
Name
(GenBank) FAD-dependent cmnm(5)s(2)U34 oxidoreductase
  KO
K15461  tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
Organism
hcs  Halomonas campaniensis
Brite
KEGG Orthology (KO) [BR:hcs00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hcs03016]
    FF32_09860
Enzymes [BR:hcs01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.61  tRNA 5-(aminomethyl)-2-thiouridylate-methyltransferase
     FF32_09860
Transfer RNA biogenesis [BR:hcs03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    FF32_09860
SSDB
Motif
Pfam: DAO Methyltransf_30 NAD_binding_9 Pyr_redox_2 GIDA NAD_binding_8 FAD_binding_2 Lycopene_cycl Pyr_redox FAD_binding_3 Thi4 3HCDH_N Pyr_redox_3 FAD_oxidored Shikimate_DH HI0933_like ApbA NAD_Gly3P_dh_N TrkA_N AlaDh_PNT_C MurD-like_N UDPG_MGDP_dh_N ThiF NAD_binding_2 Sacchrp_dh_NADP F420_oxidored Trp_halogenase
Other DBs
NCBI-ProteinID: AIA75139
Position
complement(2173776..2175788)
AA seq 670 aa
MTQRSTALPPLAALTAPLLTWNEASPHSEAFDDVYFSREDGRAETEHVFLGANHLPKRFA
DWRHSRAFVIGETGFGTGLNMLCAWDCFEQHAPSTARLHLLSTEKFPLDRVSLERALSAW
PSLAHYAQVLCAQWPEAVSGIHRLHLNERVTLDLHFGDTTERLNLLDGQVDAWFLDGFAP
AKNPEMWQPELFEAMAARSRPGATFATFTCAGVVKRGLKAAGFNWQKVPGFGRKREMLAG
YIDAPPKDNRRQSTPWFTPPAARPANHVAVIGAGMAGCSVAAALAKRGVQVTVIERDTPG
AGGSGNRQGALYVKLAAETNNQSRFYLSGLLYSQRWLSQRASATPREAPLWQPCGVVQLA
LSDKEAVRQQRFMARHPLPEAVVSAQTETLGELVDVPITASHGLFYPQAGWVHPKLLCEQ
LLQHANITLHQGEVTTLQPDGKAWQIVLANGETLTADHVVVANASLANRFEQTAALPLQQ
VRGQVSEVKLPEGVQGPQRVVCAGGYVSPPVEGVLTFGASFVPNNATNDVTTADHQRNID
ELRQTLPEWVATLETAGVTLSPDTLAGRAAVRAASPDKSPYAGPVPNADAWQQDYAVLQK
DASNVPDTLGEHHAGLWISSAHGSRGLSSAPLCAEIIASRMCDEPMPLELSLVDHLHPGR
RIISALVRAQ
NT seq 2013 nt   +upstreamnt  +downstreamnt
gtgactcaacgctctactgccctgcccccgctcgcggcgttaacggctcctttactcact
tggaacgaggcatccccccattcagaggccttcgacgatgtgtatttttccagggaagat
ggccgggctgaaaccgagcacgtttttctgggggcgaatcaccttcctaagcgctttgcg
gactggcgacacagccgcgcttttgtgattggcgaaacaggctttggcaccgggcttaat
atgctgtgcgcgtgggactgttttgaacaacacgcaccgagtactgcacgtcttcatctg
ttatccaccgagaaatttccgcttgaccgagtatctcttgagcgcgcgctaagcgcctgg
ccttcattagcacactatgcacaagtgctatgcgcccaatggcctgaagccgtcagcggc
attcaccgccttcatctcaacgagcgagtgactctcgatctgcactttggcgacaccacc
gaacgactgaacctactcgacggtcaagtcgatgcatggttcctagatggctttgctcct
gctaaaaaccccgaaatgtggcagcctgagctgttcgaagccatggcagcacgctctcgc
cctggggcaacatttgccacgtttacctgtgccggcgtcgttaaacgagggttaaaagca
gcagggtttaactggcagaaggtgcctgggtttgggcgcaagcgggaaatgttagcaggc
tatatcgacgcaccgcccaaagacaatcgccgccagtcaacaccatggttcacgccgcct
gcggcaaggccagctaaccatgtggccgtcattggagcaggcatggccggttgcagcgtg
gccgcagcgttagccaagcgtggggttcaggtaacggtcattgaacgcgatacccctggt
gccggtggctccggtaatcgtcagggagcgctgtatgtaaaattagctgcggaaacgaac
aaccagagccggttctatttatcaggccttctctacagccagcgctggcttagccagcgg
gcttcagcaacaccacgggaagcgccgctgtggcaaccatgtggcgtggtacaactggcg
ttaagcgacaaggaggctgttcgccaacagcgctttatggcacgccacccgctgccagaa
gcggtggtgtccgctcaaaccgagacgcttggcgagctggtggatgttccgatcacagcg
agtcacggactgttttatccccaggcaggctgggtgcaccccaaattactctgcgaacag
ctactacagcacgcgaatatcaccttgcaccagggggaagtaacaacccttcagcccgac
ggtaaagcttggcagatcgtgttggccaacggagaaacgctgaccgctgatcacgttgtg
gtagccaatgcgtctctggctaaccgctttgaacaaactgcagcgctaccgctacagcag
gttcgcggccaggtgagtgaagtgaagctgcccgagggagttcaaggcccgcaacgtgtg
gtatgcgctggtggctatgtgtcgccgccagtggagggcgtactgacgtttggagccagc
tttgtgcctaataacgccacgaacgacgttacgacagcagaccatcagcgcaatattgat
gaactacgccaaacactgcctgaatgggtcgccacccttgaaacggcgggcgtaacgcta
agccccgacacgctagcaggtcgtgctgcggtaagggcagccagccctgacaaaagcccc
tacgcggggcctgtgcccaatgccgacgcatggcagcaggattacgcggtgctgcaaaaa
gatgcttcgaacgtgccagataccctaggagagcaccatgcagggctgtggatatctagc
gcgcacggctctaggggcctttccagcgctccgctctgcgccgaaatcattgcctcgcga
atgtgtgatgagccgatgccgctagagctatcgttagtggatcatttacaccctgggcga
cggattattagtgcgctagtacgcgctcagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (27)   
   Pfam (27)   
All databases (46)   

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