KEGG T01265: Hden

Hyphomicrobium denitrificans ATCC 51888: Hden_1069

Entry

Hden_1069 CDS T01265

Definition

DNA polymerase LigD, ligase domain-containing protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

hdn Hyphomicrobium denitrificans ATCC 51888

Pathway

hdn03410	Base excision repair
hdn03420	Nucleotide excision repair
hdn03430	Mismatch repair
hdn03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:hdn03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:hdn03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:hdn03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:hdn03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1118404..1119474)

AA seq 356 aa
MARDRTTIGARTRAATTKPTAASRNGTRTPKMPVAAVKSTLPDFVDPCLATLVAAPPEGD
DWVHEIKFDGYRIQARIDGGDVRLITRSGLDWTDRFGALPEWLLKVHRGKALIDGELVVE
DSSGHSNFSELASALKSGDSGRFAFQCFDLLHLDGFNLMPTPLIERKDLLRQMLMRRQVP
GIRYSEHLTGDAARMLSEACRLGLEGLVSKRASRPYRSGRHDDWLKSKCIEVDEFVVIGY
VVSNVSANAVGALVVGYFDRKRLVYAGRVGTGFSQKSAADLMKELKPLAIATPSFASSLT
GLQRKGVVWVQPVLVAQIEYRAWTGDNLLRHAAFKGLREDKPAVDVRRPVVKSPKI

NT seq 1071 nt +upstreamnt +downstreamnt
gtggcgcgcgacaggacgaccatcggagcacgaacgcgggctgcaacgacgaaaccgacc
gcagcgtctcgcaacggtacgcgaacgcccaaaatgcccgtcgctgccgtcaaaagcacg
cttcccgacttcgtcgatccctgtcttgcgacgctcgtcgcggcgccgcccgaaggcgac
gattgggtgcacgagatcaaattcgacggctatcgcattcaggcccgcatcgacggcggc
gacgttcggctcatcacgcgcagcggactggattggaccgaccgtttcggtgcgcttccc
gaatggttgctcaaagtccatcgcggcaaggcgctgatcgacggcgaactcgtcgtcgaa
gacagctccggacattcgaacttctcagaactcgcctcagcgctgaagagcggagattcg
ggacgcttcgcttttcagtgtttcgatcttctgcatctcgacggcttcaatctgatgccc
actcctctgatcgaacggaaagatctgcttcggcaaatgctgatgcgccgccaagtacct
ggcattcgctatagcgaacatctgaccggcgacgccgcgcgcatgctgagcgaagcatgc
cgtctcggcctcgaaggactcgtctccaaacgcgccagcagaccgtatcgctcaggccgt
cacgacgactggctgaagagcaagtgcatcgaagtcgatgaattcgtcgtcatcggatac
gtcgtctcgaatgtctcggcgaatgccgtcggcgcactggtcgtcggctatttcgaccgc
aagcgcctggtgtacgccggacgcgtcggaaccggcttttcccaaaagtcagccgccgat
ctgatgaaggaactgaagccgctcgcaattgccacgccgtcctttgcttccagtttgacc
gggcttcagcggaagggcgtcgtctgggtccagcccgtgctcgtcgcgcaaatcgaatat
cgcgcctggaccggcgacaacctgctgcgccacgcggctttcaaaggcttgcgcgaggac
aagcccgccgtcgatgtccgccgccctgtcgtcaagtctccgaaaatctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-HDN (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system