KEGG   Hyphomicrobium denitrificans ATCC 51888: Hden_3015
Entry
Hden_3015         CDS       T01265                                 
Name
(GenBank) C-5 cytosine-specific DNA methylase
  KO
K00558  DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
Organism
hdn  Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn00270  Cysteine and methionine metabolism
hdn01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:hdn00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00270 Cysteine and methionine metabolism
    Hden_3015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hdn03000]
    Hden_3015
   03032 DNA replication proteins [BR:hdn03032]
    Hden_3015
   03036 Chromosome and associated proteins [BR:hdn03036]
    Hden_3015
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hdn02048]
    Hden_3015
Enzymes [BR:hdn01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.37  DNA (cytosine-5-)-methyltransferase
     Hden_3015
Transcription factors [BR:hdn03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    Hden_3015
DNA replication proteins [BR:hdn03032]
 Eukaryotic type
  DNA Replication Termination Factors
   DNA methylation enzymes
    Hden_3015
Chromosome and associated proteins [BR:hdn03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Hden_3015
Prokaryotic defense system [BR:hdn02048]
 Restriction and modification system (R-M system)
  Type II R-M system
   DNA methyltransferases
    Hden_3015
SSDB
Motif
Pfam: DNA_methylase
Other DBs
NCBI-ProteinID: ADJ24810
UniProt: D8JVF6
Position
complement(3096034..3097680)
AA seq 548 aa
MKPGLIIDNFAGGGGASLGVEMACWKGPDIAINHDAIALGLHATNHPHTEHHVEDVWAVD
PRAVTKGRPVSLAWFSPDCKHFSKAKGGKPVEKKIRGLAWVVIRWAVAVKPQLIILENVE
EFQDWGPLGPDNLPCPERKGRTFRLFVERLRQAGYEVDWRELKACDYGAPTIRKRLFLIA
RRDGLPIVWPEPTHAKPGSLEVGAGLRKPWRTAAECIDWSLPCPSIFGRGRPLAEKTMAR
IARGVQRYVIDAERPFIINLTHGGRVEDIDEPFKTLTGAHRGEKALVAPFLTKFRANSTG
QSLDDPMCSVTANSFIKRPGGAPPIGLVAPFFVPRHGEHATQEPRCRDVEQPMPTVTATA
NGAGLVAAFMAQHNGGMVGHSLEEPVSTLTAKCSHQQLVSTFLTKMYGSCKDGQDMRQPF
GTVTAQGQHLAEVRAFLMKYYGTGGQHQGCDEPMHTATAKARLGLVTVAGVDYQIVDIGM
RMLSPRELFRAQGFPDSYVIDRLPDGTPISKTDQIRLCGNSVCPPLARAIIAANFGNQVV
REGGRVAA
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgaaaccgggtctgatcatcgataacttcgcgggcggcggcggggcgtcgctcggtgtt
gaaatggcgtgctggaaggggccggatatcgcgatcaatcacgacgcgatcgcgctgggc
ctgcacgccaccaatcatccgcataccgagcaccacgtcgaggacgtctgggccgtcgat
ccgcgcgcggtgacgaagggccggccggtgtcgctggcgtggttttcaccggactgcaag
catttctcgaaggccaaaggcggcaagcccgtcgagaagaaaattcgcggactggcttgg
gtcgtgatccgctgggccgtcgcggtgaagcctcagctcatcatccttgagaatgttgaa
gagttccaggactggggacctctgggtccggacaatctgccatgtccggaaagaaaaggc
cggactttccggcttttcgtcgaacgcttgcgccaggccgggtacgaggtcgactggcgc
gaactcaaggcctgcgactacggcgcgccgacaatccgcaagcgcctgtttctgatcgcg
cgccgggatggactgccgatcgtctggccggagccgacgcacgcgaagccgggttcgctc
gaggtcggggccggactgagaaagccgtggcggacggccgccgaatgcatcgactggtcg
ttgccctgcccctcgatcttcggacgtgggcgtccgctcgccgagaagacgatggcgcgt
atcgcacgcggcgtgcagcggtatgtcatcgatgcggagcggccgttcatcatcaacctg
acgcatggcggccgcgtcgaggacatcgacgaaccgttcaagacgctgaccggcgcgcat
cgcggcgagaaggcgctcgtcgcgccgttccttacgaaattccgcgcgaacagcaccgga
cagtcgctcgatgatccgatgtgctcagtcacggcaaacagcttcatcaagcggccgggc
ggggcgccaccaatcggcttggtggcgccgttcttcgtgccgcgccacggcgagcatgcg
acgcaggagccgcgctgccgcgacgtcgagcagccgatgccgacggtcaccgccacggca
aacggcgccgggctcgtcgccgcgttcatggcgcagcacaacggcggcatggtcggtcat
tcgctcgaagagccagtctcgacgctcaccgcaaaatgcagccatcagcagctcgtctcg
acgtttcttacgaagatgtacggcagctgcaaagacggccaggacatgcgccagccgttc
gggaccgtcacggcgcagggccagcaccttgccgaggtgcgcgccttcctgatgaaatat
tacggcactggcgggcagcatcagggctgcgatgagccgatgcacaccgcaacggcaaag
gcccgtctcggcctcgtgaccgtcgccggcgtcgactaccagatcgtcgacatcggcatg
cggatgctgtcgccgcgcgagttgttccgcgctcagggcttccccgacagctacgtcata
gatcggctgccggacggcacgccgatttcgaagacggaccagatccggctttgcggcaac
tccgtctgcccgccgctcgcgcgcgcaatcattgctgcgaacttcgggaaccaggtcgtg
cgtgaaggcgggagggtcgcagcatga

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (32)   

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