KEGG   Hyphomicrobium denitrificans 1NES1: HYPDE_32328Help
Entry
HYPDE_32328       CDS       T02646                                 

Definition
DNA polymerase LigD, polymerase domain-containing protein
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
hdt  Hyphomicrobium denitrificans 1NES1
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hdt00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    HYPDE_32328
   03420 Nucleotide excision repair
    HYPDE_32328
   03430 Mismatch repair
    HYPDE_32328
   03450 Non-homologous end-joining
    HYPDE_32328
Enzymes [BR:hdt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HYPDE_32328
DNA repair and recombination proteins [BR:hdt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HYPDE_32328
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
1940749..1942485
Genome map
AA seq 578 aa AA seqDB search
MHWRQAQRTAKLLKLFAETLRMATKQLSEYRAKRDFTKTAEPSGSAAIRPAKHRRFVIQK
HDATRLHYDLRLELGGVFKSWAVTKGPSLDPKVKRLAVEVEDHPLDYGDFEGTIPKGQYG
GGTVMVWDRGYWAPLGEESPEQQLRKGDLKFVLVGDKLEGSWVLVRIKNDRAGNKRTNWL
LIKHRDQTARPGDGDSILSEDRSVASNRTMNDIAAGRGKGPEPFILKRRAAAKPDAVWNS
NRADGHTERDDKEPPPLRRMPVRKSAKSAKSNDRKSDPAPNTVCGITISNPDKEMWPAAD
GAAVSKLDLARYLETVGPWMLDHIKGRPCSVIRAPDGIKGETFFQRHAMRGISDEIDIVR
ISGDREPYIEVNSVDGLVALGQIAALEFHPWNCEPFDPDVPGRLVFDLDPGLDVEFARVV
DAANELRERLENVGLVSFCKTTGGKGLHVVTRLKPRRGDGIGWKEAKMFAGALCQQMAAD
DPSAYVIKMTKKLRKGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVRKGLDP
KRFTVHTVPDLIAKSKAWEDYASSGRPLGAAIKSLLGR
NT seq 1737 nt NT seq  +upstreamnt  +downstreamnt
atgcactggcggcaggcgcaacgcacggctaagctcttgaagcttttcgcggagacctta
cggatggccaccaagcagctttccgaatatcgcgccaagcgcgatttcaccaagacggcg
gagccgagcggatcggcagcgatccgcccggccaagcatcgccggttcgtcatccagaag
cacgacgcaacgcgattgcactacgatttgcggctggaactcggcggcgtcttcaagtca
tgggcggtcacaaaggggccgtcgctcgatccgaaagtgaagcgcctcgccgttgaagtc
gaagaccatccgctcgattacggcgacttcgagggcacgattccgaaaggacagtatggc
ggcggcaccgtcatggtctgggatcgcggatattgggcgccgctcggtgaggagagtccc
gagcagcaattgcgcaagggcgatctgaaattcgttctcgtcggcgataagctcgaaggc
agctgggtgctcgtgcgtatcaagaatgaccgtgcgggaaacaagcgtacgaactggctt
ttgatcaagcatcgcgatcagaccgcgaggcccggagatggagacagcattctttcggag
gatcgttcggtcgcatcgaaccggacgatgaatgacatcgcggccggacgaggcaaaggc
ccggagccattcatcctgaagcggcgtgcagcggccaagccagatgccgtgtggaattca
aaccgcgccgacggacacacggagcgggacgataaggagcctcccccgctacgccgcatg
cccgtgcgcaagagcgcaaaatcggcgaagtccaacgacagaaaaagcgatcctgcacca
aacaccgtttgcggaatcacgatctcaaatccagacaaggagatgtggcccgctgccgat
ggcgccgccgtttcgaagctcgatcttgcgcgctatctcgaaacggtcggaccctggatg
ctcgatcacatcaagggcagaccctgctccgtcatccgcgcgccggacggcatcaaaggc
gagacgttctttcagcgccatgccatgcgcggcatatcagacgagatcgatatcgtccgc
atctccggagaccgcgaaccttatatcgaagtcaacagcgtcgatggtctcgtggcactt
gggcagatcgcagcgctggaattccatccgtggaattgcgaaccgttcgaccccgatgtg
ccgggccgcttggtattcgatctcgatccagggctggacgtcgaattcgcgcgcgtggtc
gatgccgccaacgagttgcgcgagcgcttggagaacgtcggcctcgtttctttctgcaaa
acgacgggcggcaagggcctgcacgtcgtgacacggttaaagccacgccgcggcgacggt
atcggctggaaggaagcgaaaatgttcgccggtgcgctttgtcagcaaatggccgcggac
gatcccagcgcctacgtaatcaaaatgacgaagaagctgcgcaaggggcgtatttttctg
gactacctccgcaacgatcgcatggcgaccgccgtcgcgccgttgtcgccacgcgcccgg
cctggggcaaccgtctcaatgccgttgacatggacccaggttcgcaagggtctcgatccc
aagcgctttaccgtgcacaccgttcctgacctgatcgcgaaatccaaggcgtgggaagat
tacgcctcctccggccgaccgctcggggctgcgatcaaatcgctgctcggccggtga

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