KEGG   Candidatus Hoaglandella endobia: TPER_HE00292
Entry
TPER_HE00292      CDS       T04484                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
hed  Candidatus Hoaglandella endobia
Pathway
hed03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hed00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPER_HE00292 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hed03019]
    TPER_HE00292 (rne)
   03009 Ribosome biogenesis [BR:hed03009]
    TPER_HE00292 (rne)
Enzymes [BR:hed01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     TPER_HE00292 (rne)
Messenger RNA biogenesis [BR:hed03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TPER_HE00292 (rne)
Ribosome biogenesis [BR:hed03009]
 Prokaryotic type
  rRNA processing factors
   TPER_HE00292 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: CUX97219
UniProt: A0A143WTQ2
Position
I:297778..300309
AA seq 843 aa
MKRMLINATQQEELRVALVDGQRLYDLDIEIPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHAFLPLKEIAREYFSPQYADYSRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEVLSSLDLPDGMGIIIRTAGVGKSAEAL
QWDLSFRLQHWQAIKKAAEGRPAPFLIYQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHISSLGRPDFTSKIKLYSGDIPLFSHYQIESQIESAFQREVRLPSGGSIIIDTTEALT
AIDINSARSTRGVDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPLRHQREVE
NCLREAVRQDRARIQIGRISRFGLLELSRQRLSPSLGESSHHVCSRCGGTGTIRDNESLS
LSILRLIEEEALKDNTHEVHAIVPVPIASYLLNEKREAVNAIEKHQGGVRTIIVPNVQMQ
TPHYAVLRVRKGDESPTLSYLLPQLHEAEITQPSEEPSAERKRTDQPALAAGIIPEQPMV
RDKPTDVERAVTPQHSIIAAATARAQDSHGLFGRLIAGFKLFMGVPHQQDVTSSNIVDRN
NNSRRDSNSDTTRKPDIYQESRQQLLNEKEKEQKPPLHELRQDRPCCHQELNTNAKQDKA
RLVTETLSNEDEKPIQAQSSRQQRRSLNRKINRDSAGAPATPDAAMKSTTATCNNTDSSI
DELNEPIEDNSATSIPIRSRRYPRLRVSGQRRRRYRYERYPLQALVPLTAAVVSPEMASG
KVWVSYPVSPVRQQTKKVTTEITAIPLGEAASMMSVSEAMTHNKLPSATLKFKRSLCSQI
GSS
NT seq 2532 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaattaacgcaactcaacaggaagagttgcgcgtagctctagtagat
ggccagcggttgtatgatctagatattgaaatccccggccatgaacagaaaaaagcaaat
atctacaaaggtaaaattacccgtatagaacctagtttggaggcagcgtttgtggattat
ggcgcagatcgccacgcctttcttcctcttaaagaaattgctcgcgaatatttttctccg
caatatgcggactatagtagaccaaatataaaagatgtactcagagaaggtcaagaggtc
atcgtccagattgataaagaagaacggggtaacaaaggtgctgctctgactacttttatt
agtctagcaggcagctatttggtattaatgccgaataacccgcgtgcaggtggtatttcg
cgccgtattgaaggtgacgaccgtaccgaattgaaagaagtgttatcctctctagatctt
cccgacgggatggggattattatccgcactgccggcgttggaaaatcggctgaggcgctg
cagtgggacctgtcttttcgcttgcaacactggcaggctattaaaaaagccgcagaaggt
cggcctgcaccttttttgatctatcaggaaagcaacgttatcgtacgcgcttttcgcgat
tatctgcggcctgatattggtgaaatactgatcgataatccgaaagtgctagatctagcg
aaagagcatatttcctctcttggccgaccagatttcaccagcaaaataaaactttacagc
ggtgacattccactcttcagtcattaccagattgaatcacaaattgaatcagcctttcag
cgtgaagtgcgcttgccttccggcggctctatcatcattgataccactgaggcgctgaca
gccatcgatatcaactcagcacgctccacccgcggcgtcgatattgaggaaactgccttc
aataccaatctagaggctgcggatgaaattgctcggcagctgcgcttacgtgatctaggt
ggattaatagttatagactttattgatatgacgccgttacgccaccagcgtgaagtagaa
aattgcctacgtgaagcagttcgccaggaccgtgcccgcattcaaataggtcgtatctcg
cgttttggtctattggaactttcgcgtcagcgattaagcccgtctttaggagaatctagc
caccatgtttgttctcgttgtgggggcaccggcacgatccgcgataacgaatcgctatcg
ctctccatactgcgtctcattgaagaagaagcgctgaaagataatacacatgaagttcac
gctattgtgccggtacctattgcctcttatctgctaaacgagaaacgtgaagcagttaat
gctattgagaaacaccaaggcggcgtacgcacgattatcgtcccgaacgttcaaatgcag
accccgcattatgcggttttgcgagtacgtaaaggagacgaatctcctacccttagctac
ctgttaccgcaactgcacgaagcagaaataacacaaccttcggaagagccaagtgccgaa
cgaaagcgtaccgatcagccagcactagcggccggcatcatacccgaacaacccatggtc
agggacaagcctactgacgttgagcgtgcagttacgccgcagcacagcattattgcagca
gctacagcgagagcgcaagactcccacggtctttttggccgcctgatagctggctttaag
ttatttatgggcgtaccgcaccagcaagatgtcacctcttccaacatcgtagataggaac
aataatagccgtcgcgatagtaacagcgatacgaccagaaaaccagatatataccaagaa
agtcgtcagcagctcttaaacgagaaagaaaaagagcaaaagccgccgctccatgaacta
cgtcaagaccgcccatgctgtcatcaagagttgaacactaacgccaagcaagataaagct
cggcttgttacggagacccttagtaatgaagatgagaaaccgattcaggcacaatctagc
cgtcagcagcgccgctcgctaaatcgaaaaataaaccgagacagtgcgggggcccctgct
actcctgatgctgcaatgaaaagtactaccgccacatgcaataatacggacagctctatc
gacgaactgaacgaaccgatagaagacaacagtgctaccagcataccaatccggtcacgc
cgttatccacggttgcgagttagcggacagcgccgccgccgctaccgatatgagcgatat
ccactgcaggcgctggtaccgcttaccgccgcggtggtatcgcctgaaatggcatcaggt
aaagtttgggtaagctatcctgtctccccggtccggcaacagaccaagaaagtcacgact
gaaatcactgctatcccgttaggagaagctgctagcatgatgagcgtcagcgaggcaatg
acccacaataaattgccttcggcgacgctgaagttcaagaggtcattatgctcgcagatc
ggcagcagttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system