KEGG   Herbaspirillum sp. meg3: hmeg3_08055
Entry
hmeg3_08055       CDS       T05024                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hee  Herbaspirillum sp. meg3
Pathway
hee03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    hmeg3_08055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hee03400]
    hmeg3_08055
DNA repair and recombination proteins [BR:hee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     hmeg3_08055
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      hmeg3_08055
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD Kinesin AAA_30 Microtub_bd DUF2785
Other DBs
NCBI-ProteinID: ASU38251
UniProt: A0A223P8P9
Position
complement(1779188..1781281)
AA seq 697 aa
MADLSPLSTVAPTHDEGKFLTFPGSPYRLYQPFPPAGDQPAAIDKLVEGVNDGLFFQTLL
GVTGSGKTYTMANTIARLGRPAIIFAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQP
EAYVPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMI
LTLRAKDKVSQRDVIARLIQMQYSRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIEMFD
DEIDSLQLFDPLTGRVRQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKEN
KLIEEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKAGEPPPTLVDYLPQDAIMFLD
ESHVLIGQLNGMYNGDRARKTNLVDYGFRLPSALDNRPLKFDEFQSKLRQTVFVSATPAD
FENTHADQVVEQVVRPTGLVDPLIQVRPATTQVDDLMQEITIRVKKNERVLVTTLTKRMA
EQLTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVA
ILDADKEGFLRSERSLIQTIGRAARNLNGMAILYGDKVTDSMHRAIGETERRRAKQVAFN
EANGITPMGIKKEIRELIDGVYSPQEARVELMVAQEQANYEAMSEKQVSKEIKRLEKLML
DHAKNLEFEKAAKVRDQLHQLKQQLFGAAGDDNIAVA
NT seq 2094 nt   +upstreamnt  +downstreamnt
atggctgatttatcccccttaagtaccgttgcccctactcacgacgagggtaagttcctg
actttcccgggttcgccgtaccgcctgtaccagcccttcccgcctgccggcgatcagcct
gcagcaatcgacaagctggtcgagggcgtcaacgacggcctgttcttccagaccttgctg
ggcgtcacaggttcgggcaagacctacacgatggccaacaccatcgcccgcctcggccgg
cctgcgatcatcttcgccccgaacaaaacgctggcggcgcagttatatagcgaatttcgt
gagttctttccgcagaacgcggtcgaatatttcgtcagctactacgattattaccagccg
gaagcctacgtgccgcagcgcgacttgttcatcgagaaagattcctcgatcaacgagcat
attgaacagatgcgcctgtcctgcaccaaatcgctcatggaacgccgcgacgttgtgatt
gtggcaactgtttccgcgatctacggtatcggtaatccgaatgaataccatcagatgatc
ctgaccttgcgcgccaaggacaaggtcagccagcgcgacgtcatcgcccgcctgatccag
atgcaatactcgcgcaacgaagtcgacttcggccgtggcacattccgcgtgcgcggcgac
accatcgacgtgttcccggcggaacatgccgaactggcggtgcgtatcgaaatgttcgac
gacgaaatcgacagtctgcaattgttcgacccgctgaccggccgtgtgcgccagaagatt
ccgcgcttcaccgtctatcccggttcgcactacgtcacgccgcgcgccactgtgctgcgc
gccattgagaccatcaaggacgaactgcgcgagcgcctggaatttttccgcaaggaaaac
aagctcattgaagagcagcgtctcgaacagcgcacccgcttcgacatcgagatgatgacc
gaaatcggcttcaccaaaggcatcgaaaactattcgcgccatctgtccggcgccaaggcc
ggtgaaccgccgccgacgctggttgactacctgccacaagacgcgatcatgttcctcgac
gagtcgcacgtactgatcggccagttgaacggcatgtacaacggtgaccgcgcgcgcaag
accaacctggtcgactacggtttccgcctgccgtcggcgttggataatcgcccgctgaag
ttcgatgaattccagagcaagttgcgccagaccgtgttcgtgtcggccacgccggcggat
tttgaaaacacccatgccgatcaggtggtcgagcaagtggtgcgtccgaccggcctggtt
gatccgctgattcaggtgcgccctgccaccacgcaggtcgacgatctgatgcaggaaatc
accatccgcgtcaaaaagaacgagcgcgtgctggtgacgacattgaccaagcgcatggcc
gaacagttgacggaattcctgagcgacaacggcatcaaggtacgttatctgcatagcgat
atcgacaccgtcgaacgcgtggaaatcatccgcgatctgcgtctcggcaccttcgacgtg
ctggtcggcatcaacttgctgcgcgaaggtctggatattcccgaagtgtcgctggtggcg
attcttgatgccgacaaggaaggcttcctgcggtccgaacgcagtctgatccagaccatc
ggccgcgccgcgcgtaacctcaacggcatggcgatcctgtatggcgacaaggtcaccgac
tcgatgcaccgcgccatcggcgaaaccgaacgccgccgggccaagcaggttgccttcaac
gaagccaacggcatcacgccgatgggcatcaagaaggaaatccgggaactcatcgacggc
gtctacagcccgcaggaagcgcgtgtcgaactgatggtcgcgcaagagcaggccaactac
gaagcaatgagcgagaagcaagtcagcaaggaaatcaagcgcctcgaaaaactcatgctg
gatcacgccaagaacctggagttcgaaaaggcagcgaaggtgcgcgatcagctgcatcag
ctcaagcagcaattgtttggtgctgcgggtgacgataacatcgcggtagcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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