KEGG   Helicobacter pylori SouthAfrica7: HPSA_08040
Entry
HPSA_08040        CDS       T01921                                 
Name
(GenBank) penicillin-binding protein 2
  KO
K05515  penicillin-binding protein 2 [EC:3.4.16.4]
Organism
hes  Helicobacter pylori SouthAfrica7
Pathway
hes00550  Peptidoglycan biosynthesis
hes01100  Metabolic pathways
hes01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:hes00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    HPSA_08040
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    HPSA_08040
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:hes01011]
    HPSA_08040
Enzymes [BR:hes01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     HPSA_08040
Peptidoglycan biosynthesis and degradation proteins [BR:hes01011]
 Peptidoglycan biosynthesis and degradation
  DD-Transpeptidase (Class B PBP)
   HPSA_08040
SSDB
Motif
Pfam: Transpeptidase PBP_dimer
Other DBs
NCBI-ProteinID: ADU85549
UniProt: E8QUZ7
Position
complement(1633582..1635348)
AA seq 588 aa
MKSLRYKLLLFIFIGVWGVLALNLFILSIKNQEYYEKLAERNMTKKEFLIPTRGNITDRN
HEFLATNELVFGVFLPSRLRQKELLEKIETIQKFFPNFSKETLLNNYQKENSLYNHNLIK
VVGFIPYAAMQPLYTKLIQTQGIFVRPLDKRYYPNNALASHVLGYVGVASLQDLKDDEEN
QYSQIVGKTGIEKEYNKLLQGKVGYKIMHVNALNQELATLEVVPPSTNNHLQLSLDKRLQ
EEADKLFENKRGAILVMNAENGELLVAGSYPEYNLNDFVGGISQDKWQKLQDDIYNPLLN
RFANALYPPGSVVKMGVGLSFLENLNITENTTIPTPPFIEVGKRKFRDWKKTGHGNSNLY
KAIRESVDVYFYKLGLEISIEKLSKTLKEVGFGEKTGVDLPNEFVGIVPDSLWKIKRFNQ
DWRVGDTLITAIGQGSFLTTPLQVLAYTGLIATGKLATPHFAINNKQPLKDPLNSFQKKK
LQALRVGMYEVCNHKDGTAYHSTRGSKVTLACKTGTAQVVEIAQNIVDRIKEKDMEYFHR
SHAWITAFLPYEKPKYAITILVEHGEGGSKLGGLLVKMSNKLYELGYL
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgaaaagtcttcgctataaacttttactctttattttcataggggtttggggggtattg
gccttaaacttgtttattctaagcattaaaaatcaagaatactacgaaaaactcgctgaa
cggaacatgaccaaaaaagaatttttaatccccacaagaggcaatattacggacagaaac
catgagtttttagccactaatgaattggtttttggcgtgtttttacccagcagattgagg
caaaaagagcttttagaaaaaattgaaaccatccaaaaatttttccctaatttttccaaa
gaaacgcttttaaacaactaccaaaaagaaaattcgctctacaaccacaacctcattaaa
gtggttggcttcattccctatgccgccatgcaacctctttataccaaactcattcaaact
caaggcatttttgtacgccctttagacaaacgctactaccctaacaatgctttagcctct
catgttttaggctatgtgggggtggcgagtttgcaagatttgaaagacgatgaagagaat
caatacagccagattgtgggcaaaaccggcattgaaaaagaatataacaaacttttgcaa
ggcaaggtgggctataaaatcatgcatgtcaatgcgctcaaccaggaattagccacttta
gaagtagtgccgccaagcaccaataaccacttgcaactgagtttagacaaacgcttgcaa
gaagaagcggacaagctctttgaaaacaaaaggggggctattttggtgatgaacgcagaa
aatggggaattgctcgttgcggggagttaccctgaatacaatttgaacgattttgtgggc
gggattagccaagacaagtggcaaaaacttcaagatgatatttataaccccctactaaac
cgcttcgctaacgctttgtatcctccaggatctgtggtgaaaatgggcgtgggcttgagt
tttttagaaaatctcaatatcacagaaaacaccaccatacccaccccccctttcattgaa
gtgggtaagcgcaaattcagggattggaaaaaaacagggcatggcaattctaatttgtat
aaggccattagagagtccgtagatgtgtatttttataagcttgggcttgaaatctctata
gaaaaactttctaaaactttaaaggaagtgggctttggggaaaaaacaggcgtggattta
ccgaatgaatttgtagggattgtgccagatagtttatggaaaatcaagcgcttcaatcaa
gactggcgcgttggggacacgctcattaccgctattgggcaaggttcttttttaaccacg
cccttgcaagtgctagcctacacaggactcattgccacaggcaaactagcaacgcctcat
tttgctatcaataataaacaaccgctcaaagaccccctgaatagttttcaaaaaaagaag
ctccaagccttgcgcgtgggcatgtatgaagtgtgcaaccataaagacggcaccgcttat
cattccacaaggggttctaaggttactttagcgtgtaaaaccggcaccgcgcaagtcgtg
gaaatcgctcaaaacatcgtcgatcgcattaaagaaaaggatatggaatatttccatcga
tcccatgcgtggatcacagcatttttgccttatgaaaaacccaaatacgctatcactatt
ttagtagagcatggggaaggagggtcaaaactggggggtttgttagtgaaaatgagcaac
aaactctatgagcttggctatctttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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