KEGG   Halomicronema hongdechloris: XM38_037190
Entry
XM38_037190       CDS       T04928                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
hhg  Halomicronema hongdechloris
Pathway
hhg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hhg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    XM38_037190 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hhg03021]
    XM38_037190 (rpoB)
   03400 DNA repair and recombination proteins [BR:hhg03400]
    XM38_037190 (rpoB)
Enzymes [BR:hhg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     XM38_037190 (rpoB)
Transcription machinery [BR:hhg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     XM38_037190 (rpoB)
DNA repair and recombination proteins [BR:hhg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      XM38_037190 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887 DUF6061
Other DBs
NCBI-ProteinID: ASC72760
UniProt: A0A1Z3HR20
Position
3918813..3922115
AA seq 1100 aa
MTDQTYTPATFVLPDLVEIQRSSFRWFLEEGLIEELESFSPITDYTGKLELHFLGKDYQL
KSPKYAVDEAKRRDATYAVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKAETDKNGRRTYNANLIPNRGAWLKFETDKNDLVWVRIDKTRKLS
AQVLLKALGLSDNEIFDQLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTVSGGQ
QLLESRFFEPKRYDLGRVGRYKINRKLHLSVPDTVRVLTPQDILAAIDYLINLEFDIGSI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDADSLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNEFGFIETPFHKVDNGRVRKDLPPIYMTADEEDDLRVAPGD
IPTDEAGYILGDIPVPVRYRQDFTTTTPDEVDYVAVSPVQIISVATSLIPFIEHDDANRA
LMGSNMQRQAVPLLKPERPLVGTGLEAQAARDSGMVIVSLTDGEVTHVDANQIRIRDAEG
IEHKYVLQKYQRSNQDTCLNQRPLVFHGDPIKAGQVIADGSATEGGEIALGQNILVAYMP
WEGYNYEDAILISERLVYDDVYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDSLRQLD
ETGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKG
RVVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMP
YLPDGTPIDIALNPLGVPSRMNVGQVFECLLGWAAENLNARFKITPFDEMYGGEASRNST
HNKLQEARDTKAQDWVFNPEDPGKIQLYDGRTGEPFDRPVTVGKAYMLKLVHLVDDKIHA
RSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEAL
NAIVKGKAIPRPGTPESFKVLMRELQSLCLDVAVHKVETREDGTSRDVEVDLMADVSNRR
TPSRPTYESITREELEGIEE
NT seq 3303 nt   +upstreamnt  +downstreamnt
atgactgatcagacttataccccagccacctttgttttgcccgatctcgttgaaatccag
cgttccagcttccgctggtttctagaagaagggttgatcgaagaacttgaaagtttctcc
cctattactgactataccggtaaacttgagctccacttcctgggtaaagattaccaactc
aagagccccaagtatgccgttgacgaggccaaacggcgagacgccacctacgccgttcag
atgtatgtccccacccgactgatcaataaagagactggggaaattaaggagcaggaagtc
tttatcggcgatttgcccctgatgaccgatcgcggcaccttcattatcaatggagccgaa
cgggtcattgtgaatcaaattgttcgtagcccaggagtttactacaaggctgagaccgat
aaaaacggtcgtcgcacctacaatgccaacctcattcccaatagaggagcctggcttaaa
tttgagaccgacaaaaatgacttagtctgggtccgtattgataagacccgcaagttatca
gcccaagtcctcctgaaggccctagggctatcggataacgagatcttcgatcagctacgc
catccagagtactttcaaaagaccatcgagaaagaaggccagttcagtgaagaagaagcc
ctgctagagctgtaccgtaaactgcggccgggggaacctcccaccgtctctggcggacag
caactgttagagtctcgattctttgaacccaagcgctacgacctggggcgggtcggccgc
tacaaaatcaatcgcaagctacacttgagcgttcccgatactgtacgggtcctcaccccc
caagatatcctggcagccatcgattatctcatcaatttagagttcgatattggtagtatc
gacgacattgatcacctcggtaaccgccgcgtccggtcggtcggtgaattacttcagaat
caggtgcgggtaggtctcaaccgtttagagcggatcatccgggagcgcatgacagtgtct
gacgccgactccctcacccccgcttctctggtcaatccgaagccattggtcgccgccatc
aaagaattcttcggctccagccagctatcccagttcatggaccaaaccaatcccctagct
gagttgactcacaagcgtcgtctcagtgccctaggtccagggggcttaacccgagaacgg
gcagggtttgccgtgcgcgatattcacccgtcccactacggtcgtatttgccctattgag
accccagaaggccccaatgccggcttgatcggctccctagccacccatgctcgagtgaat
gaattcggcttcattgagacccccttccacaaagtcgacaatggccgagtccgtaaagat
ctacctcccatctacatgacagctgatgaggaagatgatctacgggtagctccaggggac
attcccacggatgaagccggctatattttgggcgatatcccagtacctgtccgctatcga
caagatttcaccacgacgactcccgacgaagtcgactatgtggccgtctcccctgtacaa
atcatctccgtggccacttctttgatcccatttatcgaacatgacgatgctaaccgtgcc
ctgatgggctcaaacatgcagcgtcaagcggtgccattgctaaagcctgagcgtcccttg
gttggtactggtttagaggctcaagccgctcgagattcaggcatggtcatcgttagcctt
acggatggtgaagtgacccacgttgacgccaatcaaatccgtattcgagatgctgaaggc
atcgaacataaatacgttctccagaaatatcaacggtccaaccaagatacctgtctgaat
cagcgccctcttgttttccatggggacccgatcaaagccggccaagtcattgccgatggc
tctgccactgaggggggggagattgccttagggcaaaatattctagtagcctatatgccc
tgggaaggctataactacgaagatgccatcctcatcagcgaacggctggtgtatgacgac
gtttacacgtctattcacatcgagaagtatgaaattgaggcgcgacagaccaaattaggc
ccagaggaaatcactcgagaaattcccaacgtcggtgaagactctctacgtcagctggat
gaaaccggtattattcgcatcggtgcctgggtagaggccggagatattctcgtcggcaaa
gtaactcccaagggagaatctgaccagcccccagaagaaaagttactacgagctattttc
ggagagaaggctcgcgatgtgcgagataactcattacgggtacccaacggtgaaaaaggt
cgcgtggtagatgttcgcgtgtttacccgtgaacagggtgatgaacttcctcccggggcc
aacatggtcgtgcgagtctatgttgcccaaaaacgcaagatccaggtgggtgacaaaatg
gctggtcgccatggcaacaaagggattatttcccgaatcctgccggttgaggatatgccc
tacctgcccgatggcacacctattgatatcgcccttaaccccctaggggttccttccagg
atgaacgtgggtcaggtattcgagtgtcttctaggttgggctgcagaaaacctgaatgcc
cgtttcaaaatcacgccattcgacgaaatgtatggtggagaggcatctcgtaacagtacc
cacaacaaactccaggaagctcgcgacaccaaagctcaagattgggtcttcaaccccgaa
gatcccggcaagattcaactctatgacgggcgtaccggggaacccttcgatcgccctgtt
acagttggtaaggcctacatgctgaagctggtgcacttggtggacgacaagatccacgcc
cgttccacaggcccttattccttagtgactcagcagcccttgggtggtaaggcccagcaa
ggtggtcagcgctttggtgagatggaggtgtgggctctagaagcctttggtgctgcctat
actctgcaagagctcctaacggtcaaatcggatgatatgcaagggcgcaatgaggctctc
aatgccatcgtcaaaggcaaagccatccccagacctggtactcccgagtctttcaaggtg
ctgatgcgggaactacaatccctctgcctagatgtggccgtgcataaagtagaaacccgt
gaggatggtaccagccgagatgttgaagttgacctaatggcagacgtcagtaatcgccgt
accccctcccgtccaacctatgagtccattacccgggaagaactagaagggattgaagaa
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (49)   

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