KEGG   Halobacteroides halobius: Halha_0725
Entry
Halha_0725        CDS       T02401                                 
Name
(GenBank) hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
hhl  Halobacteroides halobius
Pathway
hhl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hhl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Halha_0725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hhl03019]
    Halha_0725
Messenger RNA biogenesis [BR:hhl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Halha_0725
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6 Dynamin_M
Other DBs
NCBI-ProteinID: AGB40698
UniProt: L0K9A7
Position
700571..702235
AA seq 554 aa
MSQKNNDSVSIIPLGGIGEIGKNMMLVEMNDEILVVDAGVKFPEEDLHGVDLVIPDISYL
LRNRERVKGIVLTHGHEDHIGALPFILKKLNVPIYGTKLTLGLLREKLKSHNLLSRSYLR
QVNPGNSTKVGSFKVDFIRVNHSIADACALAIHTPLGAIVYASDFKFDQTPIKGEMTDIH
KFAELGDEGVLALFSDSTNVEREGYTNSERQVGQTLNNAFENANEKILVASFASNFHRIQ
QVFDMAVKYNRKVALSGRSMLNNVKIGRELGYFEVPDNLIIDINEINNFSPDKVVLLMTG
SQGEPRAALTRMSRGDHRISLNKGDTVVVSATAIPGNAKAVGHTINQLFKQGANVIYEAL
SGVHVSGHASREELKLMLNLTRPKYFFPVHGEYRHLHLHADLAKKVGVLKNNIFLPDLGD
RIVLTEDKGYTQGTVPAGRILVDGLGVGDVGSIVLRDRRLLSENGILMVVVTINSKGQVV
AGPDIITRGFVYVRGSEKLINDATERVEKVLSKCEEKHITEWSVLKSKIRDALDSYLYRR
TKRNPMIMPIIMEV
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgtcacaaaaaaataatgattcggtttcaataattccactaggaggaatcggagagatc
ggtaagaatatgatgctagtggaaatgaatgatgaaattttggtagtagatgctggagta
aaatttcctgaagaagatttacatggtgttgatcttgtgattccagatatttcttattta
ttaagaaatagggagcgtgtaaaaggaattgttttaactcacggacatgaagatcatatt
ggagctttaccatttattttaaagaaattaaatgttccaatctatggaactaaattaact
ttaggacttttaagggagaagttaaaatcccataatctactatctaggtcttatttaaga
caagtaaatcctggtaattctactaaagtaggttcttttaaagttgattttattcgagtc
aatcatagtattgctgatgcatgtgctttagcaattcatacaccattaggtgcaattgtg
tatgctagtgattttaaatttgaccaaactccgattaaaggggaaatgactgatatccat
aaatttgctgaattaggtgatgaaggagttctagctttattctcagatagtactaatgta
gaaagagaaggatacactaattcagaaaggcaagtaggtcaaactttgaataatgctttt
gaaaatgcaaatgaaaagatattagtagctagttttgcttcaaatttccatcggattcag
caagtatttgatatggcagttaaatataatcgtaaagtagccttaagtggtcggagtatg
ctcaataatgtaaaaattggtagagaattaggttattttgaggttcccgataatttaatt
attgatataaatgagatcaataatttttcacctgataaggtagtattattaatgactggt
agtcaaggagaaccaagagcagccttaactagaatgtcaagaggagaccatagaataagt
ttaaataaaggagatacagttgttgtctctgcaactgctattcctggtaatgctaaagct
gttggtcatacaattaatcaattatttaagcagggagcaaatgtaatttatgaagcatta
tctggagtacatgtttcaggtcatgctagtcgagaagaattaaaattaatgttaaactta
actcgtcctaaatatttcttcccggttcatggagagtacagacatttacatttgcatgct
gatttagctaagaaagtaggagttcttaaaaataatatctttcttcctgatttaggagat
cggattgttttaacagaagataaaggttatacccaaggtacagttcctgcagggagaata
ctagtagatggtttaggtgttggtgatgtaggtagtattgtactacgggatagaagatta
ttatctgaaaatggaatattgatggtagtagttacaattaatagtaaagggcaagtggta
gctggtccagatattattacacgtggttttgtttatgtaagaggttcagaaaaattaatt
aatgatgctactgaaagagtagaaaaagtattgtctaaatgtgaggaaaagcatattact
gaatggtcagtattaaaatctaagattagagatgccttagatagttatttatatagacga
actaagcgtaatccaatgattatgccaattatcatggaagtataa

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