KEGG   Hydrogenobaculum sp. HO: HydHO_1236
Entry
HydHO_1236        CDS       T02482                                 
Name
(GenBank) Excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
hho  Hydrogenobaculum sp. HO
Pathway
hho03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HydHO_1236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hho03400]
    HydHO_1236
DNA repair and recombination proteins [BR:hho03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HydHO_1236
SSDB
Motif
Pfam: UvrC_RNaseH_dom GIY-YIG UVR HHH_5 DUF5439
Other DBs
NCBI-ProteinID: AGG15550
UniProt: M1RTW4
Position
complement(1152044..1153741)
AA seq 565 aa
MDIVALIEKAPEEPGVYIFKNQKHYIYIGKAINIKKRLLQHLKEREQSKKEANIFNHSKE
LEWIVTRNEYEALLLEMDLIRTHKPKYNVLLKHGSGYPVILLTDDEYPTVKITRDTSQKG
EAFGPFLNINKAIKIKKLIHATFRLRTCEEMPKRPTPCMDYHLGLCSGPCANLISKEDYA
ISVKSAKAFLSGNVKDVLPTLYEKIEQYASNLAFEKAAFLRDQVLVLQNIVDGQGVFLYD
IEEADVFYLEGYSLWLFIIRNKRLVAHKEFRLNKELIINYEEMLGTYYMSNIVPKKIVAN
FELTENFRLFIKSKRKDVAFSNNIPKPLLKIIEKNVVLKPDTKEFESEFYKLFGRKAPKL
IECFDISHFQGQYTVGSMVVWEDGSLNKSKYRRYRIKTVDYIDDFASLKEVLSRRAKRIV
SKEDQTPDMWLIDGGKGQLSMGIEVKEKFLLNIYICSLAKKEEIIYTEDGLEIPIKNHQA
LYRVFGLLRDEAHRFAITYNRNLRSKEFIKDTLSKIKGVGKVKKEIIYRHFDSLYDFIRS
DDEKLKKLGISKSIKDQVRKMLGEN
NT seq 1698 nt   +upstreamnt  +downstreamnt
atggatatcgtagcgcttatagaaaaagccccggaagaaccaggtgtttatatctttaaa
aaccaaaaacattatatttatataggtaaagctataaatataaaaaagagattgcttcag
catctaaaagaaagagagcaatctaaaaaagaagctaatatatttaatcattctaaggag
cttgaatggatagtaacaagaaacgaatacgaagctcttcttttggagatggatcttata
aggactcacaagccaaaatacaatgtgcttttaaaacatggcagtggctaccctgttata
cttcttaccgatgatgaatatcccactgttaaaatcaccagagacacatctcaaaaagga
gaagcttttggaccatttttaaatataaacaaagccataaaaattaaaaaacttatacat
gctacttttagattaagaacttgtgaggaaatgccaaaaagaccaaccccttgtatggat
tatcatcttgggctttgttctggtccttgtgcaaacctaatatccaaagaagactacgct
ataagcgtaaaatctgcaaaagcgtttttgtctggcaacgtaaaagacgtgcttcccact
ctttatgaaaagatagagcaatatgcttcaaatcttgcttttgaaaaggcggcattttta
agagatcaggtgcttgtgcttcaaaatatagtggatgggcaaggggtttttctatacgat
atagaagaggctgatgtgttttatttggagggttatagtttatggctttttataataaga
aacaaacgccttgtagctcataaggagtttcgtttaaacaaagaacttattataaattat
gaagagatgcttggtacatactatatgtcaaatatagtacccaaaaaaattgtggcaaac
tttgagctaactgaaaattttaggctttttataaaatcaaaacgaaaagacgtagcgttt
tcaaacaacattccaaaaccgcttttaaagataatagagaaaaacgtagttttaaaacca
gacaccaaagagtttgagagtgagttttacaagctttttggaagaaaggccccaaaattg
atagaatgctttgatataagccactttcaaggtcaatataccgtaggctctatggtggtg
tgggaagatggcagtctaaacaaatcaaaatatagaaggtataggataaaaaccgtagat
tacatagatgattttgcatcgttaaaagaagtcctatcaagaagggcaaaaaggatagta
tcaaaagaggaccaaactcctgacatgtggcttatagacggtggtaagggtcagctttca
atgggtattgaggtaaaggaaaagtttttattaaacatatacatttgttctttagccaaa
aaagaagaaatcatttatacagaagacgggcttgaaatcccaattaaaaaccaccaagct
ctttatagggtatttgggcttttaagagatgaagcacaccggtttgccatcacctacaat
agaaacctccgttcaaaagagtttataaaagatactctttcaaagataaaaggcgttggc
aaggtaaaaaaagaaattatatatagacattttgatagtttgtatgattttataagatct
gacgatgaaaagcttaaaaaacttggtatatcaaaatccataaaagatcaagtaagaaag
atgctcggtgagaattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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