KEGG   Helicobacter pylori Shi112: HPSH112_07705
Entry
HPSH112_07705     CDS       T02037                                 
Name
(GenBank) exodeoxyribonuclease III
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
hhp  Helicobacter pylori Shi112
Pathway
hhp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hhp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPSH112_07705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhp03400]
    HPSH112_07705
Enzymes [BR:hhp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     HPSH112_07705
DNA repair and recombination proteins [BR:hhp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     HPSH112_07705
SSDB
Motif
Pfam: Exo_endo_phos Exo_endo_phos_2 T2SSM_b
Other DBs
NCBI-ProteinID: AFI01722
Position
complement(1574020..1574772)
AA seq 250 aa
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKGYFDFWNCAIKK
GYSGVVTFTKKEPLSVSYGINIEEHDKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRM
SWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNA
GFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGS
DHCPVGLELV
NT seq 753 nt   +upstreamnt  +downstreamnt
atgaaattgatttcatggaatgtgaacgggttaagagcttgcatgactaagggctttatg
gattttttcaatagcgttgatgcggatgttttttgcattcaagaatctaaaatgcaacaa
gatcaaaacacctttgaatttaaagggtattttgatttttggaattgcgcgattaaaaag
ggctattctggggtggtaactttcactaaaaaagagcctttaagcgtgagctatggtatc
aatatagaagagcatgacaaagaggggcgcgtggtaacttgcgaatttgagtcgttttat
ttagtgaatgtttatgtccctaattcccaacaagccctatccaggcttagttatcgcatg
agttgggaagtggaatttagaaaatttttaaaagctttagagttaaaaaaacctgtcatt
gtgtgcggggatttgaatgtggctcacaatgaaattgatttagaaaaccctaaaacaaac
cgaaaaaatgcgggctttagcgatgaagagagagggaaattcaacgagcttttgaacgcc
ggttttattgacactttccgttatttttaccctaacaaagaaaaggcttacacctggtgg
agttacatgcaacaagcaagggataaaaacattggttggcgcattgattattttttatgc
tctaatcctttaaaaacgcgcttaaaagacgctttaatctataaagatattttagggagc
gatcattgcccggtagggttagaattggtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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