KEGG   Helicobacter pylori Shi417: HPSH417_06125
Entry
HPSH417_06125     CDS       T02039                                 
Name
(GenBank) DNA polymerase III subunit delta
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
hhr  Helicobacter pylori Shi417
Pathway
hhr03030  DNA replication
hhr03430  Mismatch repair
hhr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPSH417_06125
   03430 Mismatch repair
    HPSH417_06125
   03440 Homologous recombination
    HPSH417_06125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hhr03032]
    HPSH417_06125
   03400 DNA repair and recombination proteins [BR:hhr03400]
    HPSH417_06125
Enzymes [BR:hhr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HPSH417_06125
DNA replication proteins [BR:hhr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HPSH417_06125
DNA repair and recombination proteins [BR:hhr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HPSH417_06125
SSDB
Motif
Pfam: DNA_pol3_delta DUF1877
Other DBs
NCBI-ProteinID: AFH98347
Position
complement(1279867..1280889)
AA seq 340 aa
MYRKDLDNYLKQRLPKAVFLYGEFDFFIHYYIQTISSLFKGNNPDTETSFFYASDYEKSQ
IATLLEQDSLFGGSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDT
TKYKYTSEIIVKLFQKSPLKDEAIHARFFIPKAWESLKFLQERANFLHLDISSHLLNALF
ETNNEDLSISFNDLDKLAILNAPIALEDIQELSSNAGDMDLQKLILGLFLKKSALDIYDY
LLKEGKKDADILRGLERYFYQLFLFFAHIKTSGLMDAKEVLGYAPPKEITQNYAKNALRL
KEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTPIQKIINP
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgtatcgtaaagatttggacaattatttaaaacaacgactccctaaagcggtgtttttg
tatggggagtttgatttttttatccattattatattcaaacgattagctcgctttttaaa
ggcaataaccctgacacagaaacttcgtttttttatgcgagcgattatgaaaaaagccag
attgcgacccttttagagcaggattctttatttggagggagcagtttagtcattttaaaa
ctggattttgcgctgcataagaaatttaaggaaaatgacatcaatctttttttaaaagct
ttagagcggcctagccataacaggcttatcatagggctttataattctaaaagcgacacc
acaaaatacaaatacactagcgaaattatcgttaaacttttccaaaaaagccccttgaaa
gatgaagcaatccatgcgcgcttttttatccctaaagcgtgggagagtttgaaattctta
caagaaagggcgaattttttacatttagacatcagcagtcatcttttaaacgctcttttt
gaaaccaataacgaagatttaagcatttcgtttaacgatttagacaagctagcgatatta
aacgcgcccatcgctttagaagacattcaagaattaagctccaatgcgggggatatggat
ttacaaaagctcattttagggctttttttaaaaaaaagcgcgcttgatatttatgattat
ttgttaaaagagggcaaaaaagatgcggatattttaagggggttagagcgctatttttac
cagctttttttatttttcgctcatattaaaacgagcggtttaatggatgctaaagaggtt
ttaggctacgctcctcctaaagagattacccaaaattacgctaaaaacgccctgcgtttg
aaagaagccggctataaaagggtttttgaaatttttaggttatggcacattcaaagcatg
caagggcaaaaggaattgggttttttgtatttgacccccattcaaaaaatcatcaaccct
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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