KEGG H.influenzae: HI0514

Haemophilus influenzae Rd KW20 (serotype d): HI0514

Entry

HI0514 CDS H.influenzae

Gene name rpoC

Definition DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)

Orthology K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Pathway hin00230 Purine metabolism
hin00240 Pyrimidine metabolism
hin01100 Metabolic pathways
hin03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:hin00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:hin00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:hin03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
RNA_pol_Rpb1_4 Apocytochr_F_C ApbA_C
PROSITE: CLP_PROTEASE_SER

Other DBs NCBI-GI: 16272458
NCBI-GeneID: 949579
JCVI-CMR: HI_0514
UniProt: P43739

Position complement(530561..534808)

AA seq 1415 aa
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLEAECEKLREELQETNSETKRKKITKRLKLLEAFVQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GEAELHSRVKVRITEYVKNEAGEFDAKTTLTDTTIGRAILWMIAPKGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADQIMYTGFAYAARSGSSVGIDDMEIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDILKPGTEEVLIPRNTLLDEKLCDVLDANSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTVH
LMNAKFVTNDESKLVLTSRNTELTITDAFGRTKEHYKVPYGAVLSKGDGQEVTAGETIAN
WDPHTMPVVSEVSGFVKFVDIIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDIFLPETDVLAQYFLPGKAIVSLDDGTAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAVITKAYDSEFLEGEQVEVARVKIVNRQREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRHKHRLVDDVVA
KLSEEDEAAIADEFVITADDATQNLATLLNSEIED

NT seq 4248 nt +upstreamnt +downstreamnt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcttccccagatatgatccgttcttggtcatttggtgaagtgaag
aaacctgaaaccattaactaccgtacgttcaaacctgaacgtgatggtcttttctgtgcg
cgtatcttcgggcctgtaaaagattacgaatgtttatgtggtaaatataaacgtttaaaa
caccgtggtgtgatttgtgaaaaatgtggtgttgaagtcactcaaactaaagttcgtcgt
gaacgtatgggtcatattgaacttgcatcgccagttgcacatatttggttcttaaaatca
ttgccgtctcgtatcggtttacttttagatatgccattgcgcgacatcgaacgtgtactt
tattttgaaatgtacatcgtgaccgaaccaggtatgacggacttagagcgcggtcaatta
ttaacagaagaacaataccttgacgctgaagatcgctggcaagatgaatttgaagcgaaa
atgggtgccgaagcgattcaagatctcttaaaaggtatggatcttgaagctgaatgtgaa
aaattacgtgaagaattacaagaaactaactctgaaactaaacgtaaaaaaatcactaaa
cgcttaaaattattagaagcatttgttcaatctggtaataaaccagaatggatggtgatg
acggtattgccagttcttccaccagatttacgcccattagtaccacttgatggcggtcgt
tttgcgacttcagatctgaacgatttatatcgtcgtgtaatcaaccgtaacaatcgttta
aaacgtttattagatttaattgcgccagatattattgtgcgcaacgaaaaacgtatgtta
caagaatctgttgatgccttattagataatggtcgccgcggtcgtgcaattacgggttct
aaccgtcgtccattaaaatcattagcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgttgattactctggtcgttctgtaatcactgttggccca
tacttgcacttacaccaatgtggtttaccgaagaaaatggcattggaattattccgtccg
tttatctatgcgaaattagaaagccgtggttatgctacgacaatcaaagcggctaagaaa
atggttgagcgtgaagatgcgatcgtttgggatattcttgcagaagttattcgtgaacac
ccaattctattgaaccgtgcgccaacacttcaccgtttgggtatccaagcgtttgaaccg
atcttaatcgaaggtaaagctattcaattacacccgctcgtttgtgcggcgttcaacgca
gacttcgatggtgaccaaatggcggtacacgttccattaacccttgaagcgcaattagaa
gctcgtgcgttgatgatgtccaccaataacgtgctttctccagcaaacggtgatccgatt
atcgttccatcacaagacgtggtattaggtctttactatatgacccgcgaaaaagtgaac
ggtaaaggcgaaggtatgttattgcaagatcctcgcgaagctgaaaaagcatatcgtaca
ggcgaagcggaattacattctcgcgtgaaagtgcgtattactgaatatgtgaaaaatgaa
gcgggcgaatttgatgcgaaaaccacgctgactgatacaactatcggtcgtgcaatctta
tggatgatcgcgccgaaaggcatgccttattcattgttcaaccaaacattaggtaaaaaa
gctatttctaaactgattaacgaagcatatcgtcgtttaggtttaaaagaagcggtaatg
tttgctgaccaaattatgtataccggttttgcgtatgcggcacgttctggttcatcagtt
ggtattgatgatatggaaattccagcgaagaaatacgaaattatttctgcagcggaagaa
gaagtagctgagatccaagaacaattccaatcaggtcttgtgacggcaggcgaacgctat
aataaagtaatcgatatttgggctgccgcgaatgagcgcgtagcgaaagcgatgatggaa
aacttatctcaagaagaagtcatcaatcgtgaaggtaatcctgaaaaacaagcgtccttt
aacagtatctttatgatggctgattctggtgcgcgtggttctgcagctcagattcgtcag
ttagcaggtatgcgtggtttgatggctcgtccagatggctcgatcattgaaaccccaatt
acagcaaacttccgtgaaggtttgaacgtattacagtactttatttcaacccacggtgct
cgtaaaggtttggcggataccgcattaaaaacagcgaactcaggttacttaactcgtcgt
ttagttgatgtggcacaagacttagtgattgtagaagatgactgtggtacgcacgaaggc
ttagtcatgaccccattaattgaaggtggagatgaaaaagtgccacttcgtgaattagta
ttaggtcgtgttgctgcagaagatattttaaaaccaggtacagaagaagtattaattccg
cgtaacaccttattagatgaaaaactctgtgatgtgttggatgcaaactctgtagatagc
gtaaaagtacgttctgttgtaacttgtgatactgattttggtgtatgtgcgaaatgttat
ggacgtgatcttgctcgtggtcatttaatcaaccaaggcgaagcggtgggcgttattgcc
gctcaatctatcggtgagccgggtacacagctaacaatgcgtacgttccatattggtggt
gcggcatctgcggcagcgaaagaatctagtgtgcaagttaaaaacactggtacagtgcat
ttaatgaatgcaaaattcgtgactaacgatgaaagcaaactagtattaacttctcgtaac
acggaattaactattactgatgcatttggtcgtactaaagaacattataaagtgccttat
ggtgcggtattaagcaaaggtgacggtcaagaagtcactgcaggcgaaactatcgcaaat
tgggatccacatacaatgccagttgtctctgaagtatctggttttgtgaaatttgtagat
attattgatggtttaactgtgacgcgtcaaacagatgaattaacaggtttatcatcaatc
gtggttcaagatgtgggtgaacgtgcaactgcgggtaaagatttacgtccaactattaaa
ttagttgatgcaaatggcaacgatattttcttacctgaaactgatgttcttgcacaatac
ttcttacctggtaaagcaatcgtaagtttagacgatggcacagcagtaaaagtgggtgaa
ccattagcacgtattccgcaagaatccgtgggtactaaagatattactggtggtctacca
cgcgttgcggatttatttgaagcacgtaaaccaaaagaacccgctatcttggctgaaatt
tctggtatcgtgtctttcggtaaagaaaccaaaggtaaacgccgtttattaattactcct
gcggaaggcgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtacaacgtggcgatgtaatttctgatggtgctgaaacaccacacgacatt
ttacgtttacgtggcgtgcgtgcagtaactgaatacatcgtgaacgaagtgcaagatgtt
taccgcttacaaggggtaaaaatcaacgataaacatatcgaagtaattgttcgccaaatg
ttacgtaaagcggtaattactaaagcttacgactcagaattccttgagggagaacaagtc
gaagtggctcgcgtgaaaattgttaatcgccaacgtgaagcagaaggtaaaccaccagtt
gaatttgaacgtgaattattgggtatcaccaaagcgtctcttgcgactgaatccttcatc
tctgccgcatcgttccaagaaactactcgtgttcttaccgaagcagcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaatagtaggtcgattaattcctgcgggt
acaggttttgcgtatcatcaaaatcgtcataaacatcgcttagttgatgatgtcgtagcg
aaattatctgaagaagatgaagccgctatcgctgatgagtttgtcataacggcagatgat
gcaacgcaaaatcttgcaacattgttaaattctgaaatagaagattaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (7)   
   PROSITE (1)   
All databases (23)

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