KEGG H.influenzae: HI0515

Haemophilus influenzae Rd KW20 (serotype d): HI0515

Entry

HI0515 CDS H.influenzae

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway hin00230 Purine metabolism
hin00240 Pyrimidine metabolism
hin01100 Metabolic pathways
hin03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:hin00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:hin00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:hin03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1
RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RelB
PROSITE: RNA_POL_BETA NLS_BP

Other DBs NCBI-GI: 16272459
NCBI-GeneID: 949581
JCVI-CMR: HI_0515
UniProt: P43738

Position complement(535050..539081)

AA seq 1343 aa
MGYSYSEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQKDPEGQQGLEAAFRSVFPIV
SNNGYTELQYVDYRLEEPEFDVRECQIRGSTYAAGLRVKLRLVSYDKESSSRAVKDIKEN
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTEEILNLFFDKITFEIAGDKLLMT
LVPERLRGETASFDIEANGKVYVERGRRITARHIKALEKDNISQVVVPSEYILGKVASKD
YVDLESGEIICPANGEISLETLAKLAQAGYTTIETLFTNDLDYGPYISETLRVDPTYDKT
SALYEIYRMMRPGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAFPEGEGAGIL
SNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAITPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKVVDGQVT
EEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAK
RGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGDPINR
GEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLREAKKD
LTEELEILEAGLFARVRNLLISSGADAAQLDKLDRTKWLEQTIADEEKQNQLEQLAEQYE
ELRKEFEHKLEVKRKKIIKGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMLKQKQEVE
KLRSYIQKAYDLLGNGSQKVDLSTFTDEEVLRLAGNLRKGLPVATPVFDGADEAEIKELL
KLGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQHMEPGT
PESFNVIMKEIRSLGLNIELDEE

NT seq 4032 nt +upstreamnt +downstreamnt
atgggttactcctattctgaaaaaaaacgaattcgtaaagatttcggtaaacgtccgcaa
gttttaaatgttccttatttattaaccattcagttggattcttttgataaatttattcaa
aaagatcctgaaggtcagcaaggtttagaagcggcattccgttctgtatttcctattgta
agcaataatggctatacagaattacaatatgtagattatcgtttagaagagccagagttt
gatgtacgtgagtgccaaattcgtggctcaacttatgcagcaggcttacgtgtaaaatta
cgtttagtgagctacgataaagaatcttcttcacgcgcagttaaagatattaaagaaaat
gaagtttatatgggggaaatcccattaatgactgataacggtacttttgtaattaatggt
accgagcgtgttatcgtttcacaattacaccgtagtccaggtgtattctttgattctgac
aaaggtaaaacccattcttcaggtaaagtgctttataacgcacgcattattccttaccgt
ggttcttggttagattttgaattcgatccaaaagataacttatttgcgcgcattgaccgt
cgccgtaaattaccggcaacaatcattcttcgtgcattaggctacaccactgaagaaatc
ttaaacttattctttgataaaattacctttgaaatcgctggcgataaattgttaatgact
ttagtgccagaacgtttacgtggtgaaacggcttcttttgatattgaagcaaatggcaaa
gtgtatgttgaacgtggtcgtcgcatcactgctcgtcacattaaagcattagaaaaagat
aatatctcacaagtggttgtgccttctgaatatattttaggtaaagttgcgtcgaaagat
tatgttgatttagagtctggcgaaattatttgtcctgcaaatggcgaaatttcgttagaa
accctcgcaaaattagcacaagctggttacaccacgatcgaaactttatttactaatgat
ttagattacggtccatatatttctgaaacgctacgtgtcgatccaacttatgacaaaact
agtgcgctttacgaaatttatcgtatgatgcgtccgggcgagccaccaacaccagaatct
tcagaagcgttattcaataatttattcttctctgcagaacgttatgatttatctacagta
ggtcgtatgaagttcaaccgttctttagcttttccagaaggggaaggtgcgggtatttta
agcaatgaagatattattgcggtaatgcgtaaattgatcgacatccgtaatggtcgtggc
gaagtagacgatattgaccatttgggtaaccgtcgtatccgtagcgtgggcgaaatggct
gaaaaccaattccgtatcggtttagtgcgtgttgaaagagcggtcaaagaacgtctatct
ttaggcgatttagatgcgatcacgccacaagacttaattaacccgaaaccgatttctgcg
gcagtaaaagaattctttggttcttcacagctttcgcaatttatggatcaaaacaaccca
ttgtcagaagtgacacacaaacgtcgtatttctgcattaggtccaggcggtttaacgcgt
gagcgtgcaggctttgaagtgcgtgacgtacataatactcactatggtcgtttatgtccg
attgaaacccctgaaggtccaaacatcggtttgatcaactcactttctgcttttgcacgt
actaatgattatggtttcttagaaacaccatatcgtaaagtggttgatggtcaagttact
gaagaaattgaatacttatctgtaattgatgaagcaaactacatcattgcacaggcaaac
tcaaacttagacgaaaataaccgttttactgatgctttcgttactgctcgtggtgaacgt
ggtgaatctggtttatataaacctgaagatattcactatatggatgtttcgacacaacaa
gtggtatctgttgcggctgcattaattccattccttgagcatgacgatgcgaaccgtgcg
ttgatgggtgcgaacatgcaacgtcaagcagttccaacattacgtgcggataaaccatta
gttggtacaggtatggaaaaaccaatcgcacttgactcaggtgttgcggttgttgcaaaa
cgtggtggtaccgttcagtacgttgatgcgtctcgtattgtgattaaagtaaatgaagat
gaaaccattgcaggtgaagctggtattgatatttataatttaattaaatacacccgctct
aaccaaaatacttgtattaaccaaattccttgtgtgaatttaggcgatccaattaatcgt
ggcgaagtattagcagatggtccttcaactgatttaggggaacttgcattaggtcaaaat
attcgcgtagcgttcatgccttggaacggctataactttgaagactcaatgttagtttct
gaacgtgttgttcaacaagaccgtttcactaccatccatattcaagaattatcttgtgtt
gcgcgtgatactaagttaggtgcagaagaaattactgcggatattccaaacgtaggtgaa
tcagcgttaagcaaacttgatgaatctggtatcgtttatgtcggcgctgaggttaaaggt
ggcgacatcttagtaggtaaagtaacccctaaaggcgaaactcaattaaccccagaagaa
aaattgttacgtgcaatctttggggaaaaagcttccgatgtgaaagattcttcattacgc
gtgccaaatggtacatcaggtacggttattgatgttcaagtcttcactcgtgacggcgta
gaaaaagataaacgtgcattagaaatcgaagaaatgcaacttcgtgaagcgaaaaaagat
ttaactgaagagttagagattttagaagctggtttatttgctcgtgtgcgtaatcttctt
atttctagtggtgcggatgcggcgcaattagataaattagatcgcactaaatggttagaa
caaaccattgcagatgaagaaaaacaaaaccaattagaacagcttgctgagcaatacgaa
gaacttcgtaaagagtttgaacataaacttgaagtgaaacgtaagaaaatcattaaaggc
gatgatcttgcaccgggcgtattaaaagttgtgaaagtttaccttgcagtgaaacgtcaa
atccagccgggggataaaatggcgggtcgtcacggtaacaaaggtgttatctcgaaaatt
aacccagttgaagatatgccatacgatgaaaatggtcagccagttgaaatcgtattaaac
ccactgggcgtaccgtctcgtatgaacatcggtcagatccttgaaactcacttaggttta
gcggcaaaaggtattggtgatcaaatcaatgcaatgcttaaacaaaaacaagaagtggaa
aaattacgtagctatatccaaaaagcatacgatttattaggtaatggttcacaaaaagtg
gatttaagcacctttactgatgaagaagtattgcgtttagcgggaaatttacgtaaaggc
ttaccagttgcaacgccagtgttcgatggtgcagacgaagcggaaatcaaagagctatta
aaactgggtggattaccaacttcaggtcaaataaccctttacgatggtcgtactggcgag
aaatttgaacgtccagtaaccgtgggttatatgtacatgctaaaattgaaccacttagtt
gatgataaaatgcacgctcgttcaacaggttcttatagccttgttacacaacagccattg
ggtggtaaggcacaatttggtggtcagcgtttcggtgagatggaggtatgggcacttgaa
gcatatggtgcagcctacaccttacaagaaatgctaactgtgaaatccgatgatgtgaat
ggtcgtacgaagatgtataaaaatatcgtaagtggcaaccaacatatggagccaggcaca
ccggaatctttcaacgtaattatgaaagaaatccgctcacttggtttaaatatcgagtta
gacgaagagtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (7)   
   PROSITE (2)   
All databases (24)

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