KEGG   Haemophilus influenzae PittEE (nontypeable): CGSHiEE_00430
Entry
CGSHiEE_00430     CDS       T00543                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
hip  Haemophilus influenzae PittEE (nontypeable)
Pathway
hip03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CGSHiEE_00430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hip03021]
    CGSHiEE_00430
   03400 DNA repair and recombination proteins [BR:hip03400]
    CGSHiEE_00430
Enzymes [BR:hip01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CGSHiEE_00430
Transcription machinery [BR:hip03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CGSHiEE_00430
DNA repair and recombination proteins [BR:hip03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CGSHiEE_00430
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: ABQ97580
UniProt: A5U9X9
Position
82391..86641
AA seq 1416 aa
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLEAECEKLREELQETNSETKRKKITKRLKLLEAFVQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREEAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GEAELHSRVKVRITEYVKNEAGEFDAKTTLTDTTIGRAILWMIAPKGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADQIMYTGFAYAARSGSSVGIDDMEIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDILKPGTEEVLIPRNTLLDEKLCDVLDANSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTVH
LMNAKFVTNDESKLVLTSRNTELTITDAFGRTKEHYKVPYGAVLSKGDGQEVTAGETIAN
WDPHTMPVVSEVSGFVKFVDIIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDIFLPETDVLAQYFLPGKAIVSLDDGAAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTEGETYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAVITKAYDSEFLEGEQVEVARVKIVNRQREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRHKHRLVDDVVA
KLSEEDEATIADEFVMTADDASASLAEMLNMADDAE
NT seq 4251 nt   +upstreamnt  +downstreamnt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcttccccagatatgatccgttcttggtcatttggtgaagtgaag
aaacctgaaaccattaactaccgtacgttcaaacctgaacgtgatggtcttttctgtgcg
cgtatcttcgggcctgtaaaagattacgaatgtttatgtggtaaatataaacgtttaaaa
caccgtggtgtgatttgtgaaaaatgtggtgttgaagtcactcaaactaaagttcgtcgt
gaacgtatgggtcatattgaacttgcatcgccagttgcacatatttggttcttaaaatca
ttgccgtctcgtatcggtttacttttagatatgccattgcgcgatatcgaacgtgtactt
tattttgaaatgtacatcgtgaccgaaccaggtatgacggacttagagcgcggtcaatta
ttaacagaagaacaataccttgacgctgaagatcgttggcaagatgaatttgaagcgaaa
atgggtgccgaagcgattcaagatctcttaaaaggtatggatcttgaagctgaatgtgaa
aaattacgtgaagaattacaagaaactaactctgaaactaaacgtaaaaaaatcactaaa
cgcttaaaattattagaagcatttgttcaatctggtaataaaccagaatggatggtgatg
acggtattgccagttcttccaccagatttacgcccattagtaccacttgatggcggtcgt
tttgcgacttcagatctgaacgatttatatcgtcgtgtaatcaaccgtaacaatcgttta
aaacgtttattagatttaattgcgccagatattattgtgcgcaacgaaaaacgtatgtta
caagaatctgttgatgccttattagataatggtcgtcgcggtcgtgcaattacgggttct
aaccgtcgtccattaaaatcattagcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaatttattaggtaaacgtgttgattactctggtcgttctgtaatcactgttggccca
tacttgcacttacaccaatgtggtttaccgaagaaaatggcattggaattattccgtccg
tttatctatgcgaaattagaaagccgtggttatgctacgacaatcaaagcggctaagaaa
atggttgagcgtgaagaggcgatcgtttgggatattcttgcagaagttattcgtgaacac
ccaattctattgaaccgtgcgccaacacttcaccgtttgggtatccaagcgtttgaaccg
atcttaatcgaaggtaaagcgattcaattacacccactcgtttgtgcggcgtttaacgca
gacttcgatggtgaccaaatggcggtacatgttccattaacccttgaagcgcaattagaa
gctcgtgcgttgatgatgtccaccaataacgtgctttctccagcaaacggtgatcctatt
atcgttccatcacaagacgtggtattaggtctttactatatgacccgcgaaaaagtgaac
ggtaaaggcgaaggtatgttattgcaagatcctcgcgaagctgaaaaagcatatcgtaca
ggcgaagcagaattacattctcgtgtgaaagtacgtattactgaatatgtgaaaaatgaa
gcgggcgaatttgatgcgaaaaccacgctgactgatacaactatcggtcgtgcaatctta
tggatgatcgcgccgaaaggcatgccttattcattgttcaaccaaacattaggtaaaaaa
gccatttctaaactgattaacgaagcatatcgtcgtttaggtttaaaagaagcggtaatg
tttgctgaccaaattatgtataccggttttgcgtatgcggcacgttctggttcatcagtt
ggtattgatgatatggaaattccagcgaagaaatacgaaattatttctgcagcggaagaa
gaagtagctgagatccaagaacaattccaatcaggtcttgtgacggcaggcgaacgctat
aataaagtaatcgatatttgggctgccgcgaatgagcgcgtagcgaaagcgatgatggaa
aacttatctcaagaagaagtcatcaatcgtgaaggtaatcctgaaaaacaagcgtccttt
aacagtatctttatgatggctgattctggtgcgcgtggttctgcagcgcagattcgtcag
ttagcaggtatgcgtggtttgatggctcgtccagatggctcgatcattgaaaccccaatt
acagcaaacttccgtgaaggtttgaacgtattacagtactttatttcaacccacggtgct
cgtaaaggtttggcggataccgcattaaaaacagcgaactcaggttacttaactcgtcgt
ttagttgatgtggcacaagacttagtgattgtagaagatgactgtggtacgcacgaaggc
ttagtcatgaccccattaattgaaggtggagatgaaaaagtgccacttcgtgaattagta
ttaggtcgtgttgctgcagaagatattttaaaaccaggtacagaagaagtattaattccg
cgtaacaccttattagatgaaaaactctgtgatgtgttggatgcaaactctgtagatagc
gtaaaagtacgttctgttgtaacttgtgatactgattttggtgtatgtgcgaaatgttat
ggtcgtgatcttgcgcgtggtcatttaatcaaccaaggcgaagcggtgggcgttattgcc
gctcaatctatcggtgagccgggtacacagctaacaatgcgtacgttccatattggtggt
gcggcatctgcggcagcgaaagaatctagtgtgcaagttaaaaacactggtacagtgcat
ttaatgaatgcaaaattcgtgactaacgatgaaagcaaactagtattaacttctcgtaac
acggaattaactattactgatgcatttggtcgtactaaagaacattataaagtgccttat
ggtgcggtattaagcaaaggtgacggtcaagaagtcactgcaggcgaaactatcgcaaat
tgggatccacatacaatgccagttgtctctgaagtatctggttttgtgaaatttgtagac
attattgatggtttaactgtgacgcgtcaaacagatgaattaacaggtttatcatcaatc
gtggttcaagatgtgggtgaacgtgcaactgcgggtaaagatttacgtccaactattaaa
ttagttgatgcaaatggcaacgatattttcttacctgaaactgatgttcttgcacaatac
ttcttacctggtaaagcaatcgtaagtttagacgatggtgcagcagtgaaagtaggggaa
ccattagcacgtattccacaagaatctgtgggtactaaagatattaccggtggtctacca
cgcgttgcggatttatttgaagcacgtaaaccaaaagaacccgctatcttggctgaaatt
tctggtatcgtgtctttcggtaaagaaactaaaggtaaacgccgtttattaattactcct
acagaaggcgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtacaacgtggcgacgtaatttctgatggtgctgaaacaccacatgacatt
ttacgtttacgtggcgtgcgtgcagtaactgaatacatcgtgaacgaggtacaagatgtt
taccgcttacaaggggtaaaaatcaacgataaacatatcgaagttatcgttcgtcaaatg
ttacgtaaagcggtaattactaaagcttacgactcagaattccttgaaggggaacaagtt
gaagtggctcgcgtgaaaattgttaatcgccaacgcgaagcagagggcaaaccgccagtt
gaatttgaacgcgaattattgggtattaccaaagcgtctcttgcgactgaatccttcatc
tctgccgcatcgttccaagaaactacacgtgttcttactgaagcagctgtggcaggtaaa
cgtgatgaattgcgtggcttgaaagagaacgtaatcgtaggtcgtttaatcccagcaggt
acaggttttgcgtatcatcaaaatcgtcacaaacatcgtttagttgatgatgtcgtagcg
aaattatctgaagaagatgaagccactatcgctgatgaatttgtcatgactgcagatgat
gcaagtgcaagcttagctgaaatgcttaatatggcagatgatgcggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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