KEGG   Heterobasidion irregulare: HETIRDRAFT_317594
Entry
HETIRDRAFT_317594 CDS       T03455                                 
Name
(RefSeq) hypothetical protein
  KO
K10610  DNA damage-binding protein 1
Organism
hir  Heterobasidion irregulare
Pathway
hir03420  Nucleotide excision repair
hir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    HETIRDRAFT_317594
  09124 Replication and repair
   03420 Nucleotide excision repair
    HETIRDRAFT_317594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hir04121]
    HETIRDRAFT_317594
   03400 DNA repair and recombination proteins [BR:hir03400]
    HETIRDRAFT_317594
Ubiquitin system [BR:hir04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     HETIRDRAFT_317594
DNA repair and recombination proteins [BR:hir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      HETIRDRAFT_317594
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      HETIRDRAFT_317594
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 20670432
NCBI-ProteinID: XP_009546431
JGI: Hetan2_317594
UniProt: W4K7S1
Position
Unknown
AA seq 1254 aa
MKVVTTFHPSSSVVSSLKCHLTPDTSLEHLVVAKINRIDIFSTRPEGLKHECGVDIWGRI
SALKAVASTNSRDNLLLLTDHPDPKVVLLTSRNSKTGGLLLELSQTIELYERNARPAEFL
QDVVVNASGRVAIASCYAGKLRAIVFKGDRMDVDFDVAVPEFSVLSLAFISSRSGIHALA
ILHLDHNQQVQLLSRDLDISAYELSPSPSLLLPPTPLPTAAYPFTDSPPILINVPSIESV
SFDDDDDAVFSGGVLVVGGRKIQLFPFASKDWQDKYKGKQRRLESKKKSKDEKLSLLAKE
KEKDRETKKRKAKANVDWPWSEVTAWCPVSGTGTSYIIGDAYGQLALLSLDRLQDQGLIL
LPLGQVSPPTTLTYLSSQVFYLGSHFGDSQLLRVHSSPFSALKLPTLLIAPSVVTVSPDF
LISNDKGKGKAGVDSRKDIGRVVRSQGNFLEVMDTWKNIAPIMDAVLADTDGSGHSNIVT
CSGGKNAGSLRVIRNGADFHEQALIEGFHDVTGLWSIRPTFKNLQDSHIIVSDGQQSSVF
RLNNTETVTRIDPLVAGFITKSPTLAVNNLARRTKKPGATSLTYEDSPLVVQVTPKRVVL
VEYDATLDMHRVVSEWAPSDQGVTWSRREIVLASVNSSQIVLALKGGRVAVWSPSTINGV
VGIDHIPCSHRDLAGEIAAISCSPINHSDPFSAFVIVGFWAPHRVEILSVTKANDYLGRV
CDPVHVPSLPRSLLLLGFVPPPAPTSSEYHSHLLIGLADGTLVSYSYQGQQLGDRKTMSL
GHSPVSLVRSQVDGRSTVLALGTTAAMLFWGKERLQRSPVLLKDASAASVVNTAWWQSCL
VAATSSGLVIGRVRDLDKMHIRSIPLGLDNPRRLAYSPALRTFGVGCVRTEPGRVGDAEM
MASSFKVLDDTTFQVLGQFACEMHHEVTAIQNVIVKGGDSHWCLGTANFDPAEKEPSQGR
LYVFSMNDRSSAHIALEIVASIDVPGCIYQLSSIDGFIVGAVNSSVAVYRLEAGDNPSLT
KVCEWNHNYLVMSLATHGSRLIVGDAISSVSILSFQGETLTTVARDYGPLWPVAVEAWGE
EGVVGANSDCNLFTFSVQRLEQRTVLYRDGHYHLDDLVNKIVLGAIHSSDAAEDAIESKA
LIFTASGRIGVLLDMGEELSLQMSAVQRNLSKIVTDVAGARHTRWRTPAGGRERTDADEA
AYGFLDGDFLEQFMNYSETSPEMEQIMSGENEAEKLAQKYAHIRRILETLQGMH
NT seq 3765 nt   +upstreamnt  +downstreamnt
atgaaggtcgtcaccacatttcatccgtcgtcttcggtagtcagttccctgaaatgccat
ctcactcctgacacatctctcgagcatcttgttgtcgcaaagatcaacagaatagatata
ttctctactcggccggagggtctgaaacacgaatgtggtgtagatatatggggccgtatc
tcggctctcaaggctgtcgcatccacgaactctcgagataacctcttactactaacagac
catccagatccaaaggtagtcctacttaccagcagaaactcgaagacaggagggcttctg
ctcgagttatcgcaaaccatcgagctctatgaacgaaatgcgcgcccggctgagttcctg
caagacgtggttgtgaatgcatctggtcgagttgctattgccagttgttacgcaggcaag
ctgagggcaatcgttttcaaaggcgatcgaatggatgtggactttgatgttgcagtacca
gagttcagtgtactctctcttgctttcatatcgtcccgctccggtatacacgctctggca
atattgcacctggatcacaaccaacaagtgcagcttctttcgcgcgatttagatattagc
gcatatgagttatccccttctccatctctcttgctcccccctacccctctcccgactgca
gcatatcctttcacagacagtccacccatcctcatcaacgttccctccatagagtctgtg
agcttcgatgacgatgatgacgccgtgttctcagggggtgtgctggtagttgggggacgg
aagatccaattatttccgtttgcgtccaaagactggcaggacaaatacaagggtaagcaa
aggagattggaaagtaagaagaagagcaaggacgagaagctatcattgttggccaaagag
aaagagaaagacagagagaccaagaagcggaaggctaaggccaatgtcgattggccatgg
agtgaggtaacagcatggtgtcctgtctctgggaccggcactagttacatcattggggac
gcatatggccagttggccttgctctcgctcgaccgtttgcaggatcaggggctcattctt
cttccactcggtcaagtttctccaccgacaacgctcacgtacctgtcatcacaagtattc
tatctgggttctcactttggagactcgcaactccttagagtccactcatcgccattttcg
gcactcaaacttcccactttacttatcgcccctagcgttgtaaccgtctctcctgatttt
cttatatcaaacgataagggcaaggggaaggccggtgtcgactcaaggaaggacatcggc
cgagtcgttcggtcccagggcaatttcttagaggtcatggatacgtggaagaacattgcc
cctattatggatgcagtgctggcagatacagacgggagcggacattctaatatagtgaca
tgttccggcggcaagaatgctgggagcttgcgagtcatacggaacggtgcagacttccat
gaacaggcccttatcgaaggatttcatgatgtgacagggctatggtcgattcgacccacc
tttaagaatcttcaggactcacatatcattgtctcagacgggcaacaatcctctgttttc
cgcctgaacaacacagagacggtcacacgaatcgatccattagttgctggtttcatcaca
aagtctccgactctagctgtaaacaatctggccagacgcacaaagaaaccgggtgctacc
tctttgacgtacgaagactcgccactcgttgttcaggtcacccccaaacgggtagtgttg
gttgaatacgatgcaactctggacatgcatcgagtggtgagcgagtgggctccaagtgat
cagggagtaacgtggtccaggagagagatcgtacttgcctctgtcaacagcagccagatc
gttttggcattaaaaggaggccgggtagctgtgtggtcgccctcaaccataaatggtgtc
gtaggcattgatcatatcccatgtagccatcgcgatctggctggtgaaatagcggcaatt
tcttgcagcccaatcaatcattcggatccattctcggcattcgttattgtgggattctgg
gcacctcaccgcgtggagatcctgtctgttaccaaagcaaacgactacttagggcgtgta
tgcgatcccgtccacgttccatcgcttcctcgctctcttctattacttggtttcgtaccg
ccgcccgcaccgaccagctctgaatatcattcgcatctgttgatcggattggcagatgga
acgttggtatcatactcatatcaaggacaacaactcggcgacagaaaaaccatgtcacta
ggtcattcaccggtctctctagtcaggagtcaggtagatggacgctctactgtgcttgcg
ttgggaacgacagctgctatgttgttctggggcaaggagcgtctacagcgttcgcctgtc
ctcttgaaagatgcatctgccgcatccgtggtgaacactgcgtggtggcaatcgtgtctt
gtggccgcgacctcgtctggtctagtaatcggacgcgttcgcgacttggacaagatgcac
attcgctcaatccctttgggcttggacaaccctcgaaggttagcatattctcccgccctg
aggacctttggagtagggtgtgtgcgcacggagcctggacgtgttggcgatgcggagatg
atggccagctctttcaaagtgctcgacgacacgacgtttcaggttttgggtcaatttgca
tgcgagatgcatcatgaagtcacagctatccagaatgtcattgtcaaagggggggattcc
cactggtgcctggggacagcaaattttgacccggccgaaaaggaaccttcgcaaggacga
ttgtatgtcttttcaatgaatgacaggagttcggcacacattgctctcgaaattgtggcc
tcaatcgatgtccccggctgtatttatcagttgtcatcgatcgatggcttcatcgtgggc
gcggtgaattcttcggttgcggtttatagattggaggctggtgacaatccatctttgaca
aaagtctgcgagtggaatcataattacctagtcatgagcctcgcaacccatggctctcgc
ttgatcgttggagacgccattagctctgtctctatattatctttccagggtgagactttg
acaacagtcgcaagggattatggtcctttatggccagtcgcagtcgaagcatggggggaa
gaaggcgttgttggtgcaaatagcgactgcaacctctttactttcagcgttcaacgttta
gaacaaaggacggttttgtatcgagatgggcactatcatctcgacgaccttgtcaacaaa
attgtgctgggcgctatacattcgtcggatgccgctgaagatgcgattgaatcaaaagcc
ttgattttcacggcatcggggcggataggtgtccttcttgacatgggcgaggagctttcc
ttacagatgagtgctgttcagcggaacctaagcaagatcgtcaccgatgtcgcgggggct
cgtcatacaaggtggagaacgccagctggaggacgggagaggacggatgctgatgaggcc
gcttatggtttccttgatggtgatttcttagagcagtttatgaattactctgagacatca
ccggagatggaacagatcatgtcaggtgagaacgaggcagaaaagctggcgcagaagtac
gcgcatatacgacgaattttggagacccttcagggcatgcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (39)   

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