KEGG T03720: NTHI477

Haemophilus influenzae 477: NTHI477_00395

Entry

NTHI477_00395     CDS       T03720

Symbol

mfd

Name

(GenBank) Transcription-repair-coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

hiw Haemophilus influenzae 477

Pathway

hiw03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:hiw00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NTHI477_00395 (mfd)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hiw03400]
    NTHI477_00395 (mfd)
Enzymes [BR:hiw01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NTHI477_00395 (mfd)
DNA repair and recombination proteins [BR:hiw03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      NTHI477_00395 (mfd)

SSDB

Motif

Pfam:

TRCF DEAD MFD_D3 UvrB_inter Helicase_C CarD_TRCF_RID ResIII ERCC3_RAD25_C UB2H SecA_DEAD RecG_dom3_C

Other DBs

NCBI-ProteinID:

AJO87439

Position

complement(392277..395759)

AA seq 1160 aa
MRQFLYKIDTLFIFMKTAFFQPDIPTQPNDHKILGNVLQGADALAISEIAEQNQNLTVVV
TPDTRSAVRLSRILSELSSQNVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGI
FLLPISTLMQRLCPPQYLQHNVLLIKKGDRLVIDKIRLQLEVAGYRAVEQVLEHGEYAVR
GALLDLFPMGSAMPFRLDFFDDEIDSIRTFDVDTQRTLDEINSINLLPAHEFPTDDKGIE
FFRAQFRETFGEIRRDPEHIYQQISKGTLISGIEYWQPLFFSEMATLFDYLPEQTLFVDM
ENNQTQGERFYQDAKQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVR
SSVRQKNLPVAALPEVTIQSQQKEPLGQLRQFIEHFKGNVLFSVETEGRRETLLDLLSAL
KLKPKQIQSLEQAKNEKFSLLVSSLEQGFIIEQSFPVAIIGEANLLGERVQQRSRDKRKT
INPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVT
SLHLISRYVGGSDESAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFK
YDREEFQQFAATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFL
AVMNHKQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKV
DILIGTHKLIQSDVKFSDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLN
MAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIEN
TAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFI
LATHDLEIRGAGELLGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADI
ELRVPALLPDDYLGDVNMRLSFYKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQIA
ELRLLVEPLKVVRIDAGTQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPLKFKFMKD
LSDNKVRLEFVVDLLRTIAA

NT seq 3483 nt +upstreamnt +downstreamnt
atgcgtcaatttttatacaagattgacacattatttatatttatgaaaacggcttttttc
caacctgatattccaacccaacctaatgatcataaaattttaggcaatgtcttacaaggt
gctgatgcactggcgattagtgaaattgcagagcaaaatcaaaatttaactgtagtagtc
acaccagatacacgaagtgcggtacgtttatcacggattttatcggaattaagcagccaa
aatgtatgtctttttcctgattgggaaaccttaccttacgataccttttctccccatcaa
gaaattatttcctctcgtttaagtgcgcttttccatttacaaaatgcgaaaaaaggcatt
ttcttattgccgatttcgacattaatgcaacgcctttgcccgccacaatatttacaacac
aatgtgcttctgattaaaaaaggcgatcgtttggtcatcgataaaatacgcttacaatta
gaagtcgcgggctatcgtgctgtggagcaagtattagaacacggcgagtacgcagttcgt
ggtgctttgttggatcttttcccaatgggaagtgcgatgccttttcgtcttgattttttt
gatgatgaaattgattccattcgcacttttgatgtggacacgcaacgtactcttgatgaa
atcaactcaattaaccttttaccagcgcacgaatttccaacggatgataaagggattgaa
tttttccgtgcacaatttcgtgaaacctttggggagatccgtcgagatcccgaacatatt
tatcagcaaatcagtaagggtaccttgatttctggcattgaatattggcagccacttttc
ttttctgaaatggcgactttgtttgattatttgccagaacaaacgctgtttgtagatatg
gaaaacaaccaaacgcaaggcgagcgtttttatcaagatgccaaacagcgttatgaacaa
cgtaaagtggatccaatgcgtccgcttttatcgcctgaaaaattatggctcaatgttgat
gaagttaatcgccgattgaaatcttatccacgtattacatttaaagcggaaaaagtgcgg
tcatcggtacgccagaaaaatttacctgttgccgctttaccagaagtaactattcaatcc
cagcaaaaagaaccattggggcaattacgccaatttattgagcattttaaaggaaacgta
ctgttttcggtggagacggaaggtcgccgagagacgttgcttgatttgctttcagcgtta
aaactcaaaccaaaacaaattcaatccttggaacaagctaagaatgaaaaatttagcttg
ttagtcagctctcttgaacaaggttttattattgaacaatcgtttcctgttgcgattatt
ggcgaagctaatttacttggcgaacgtgttcaacaacgttctagagataaacgtaaaacg
attaatcctgacacgcttgtacgcaatcttgccgagttgaaaatagggcaaccagttgtg
catcttgatcacggtgtggggcgttatggtggtttggttaccttagatacaggcggcatt
aaagcagaatatttgctactaaattatgcaaatgaatcaaaactttatgtgccagtcact
tcattacatctcattagccgttatgttggtggttctgatgaaagtgcgccattacataaa
ttgggtaacgaggcttgggcgaaatcacgccaaaaagcagcggagaaaattcgtgatgtg
gcggcagagttactagatgtttatgcacaacgtgaagcgaaaaaaggctttgcctttaaa
tatgatcgtgaagaatttcaacaatttgctgcaacctttccttttgaagaaacttacgat
caggaaatggcaattaatgcggtaatttcggatatgtgtcagccaaaagcaatggatcgc
cttgtttgcggtgatgtgggttttggtaaaactgaagtggcaatgcgcgctgcctttttg
gctgtgatgaatcataaacaagtagcagtgctagtgccaaccacattgttagcccaacag
cattatgagaattttaaagatcgttttgcgaacttgcctgtgaacgtagaagtgttatcg
cgtttcaaaactgcaaaagaacaaaaacaaattctggaaaaccttgcagaaggcaaagtc
gatatactgattggtacccataaattaattcaatcagatgtcaaatttagcgatcttggt
ttgttgattattgatgaagagcaccgttttggtgtagggcaaaaagagaaaatcaaacag
ctccgtgcgaatatcgatattcttaccctaacggcaacgccaattccgcgtacgctaaat
atggcgatgaatggtattcgtgatctgtccattatttccacacctcctgctcgccgatta
agtattaaaaccttcgtccgccagaatgatgatcttgttgtacgagaagcgattttgcgt
gaaatcttgcgtggcggacaggtttattacctccataatgatgtcgcaagtattgaaaat
acagcagaaaaactcaccgcacttgtgccagaagcacgagtgattgtggggcatggacaa
atgcgcgaacgtgaattagagcgtgtgatgagtgatttttatcatcagcgttataacgtc
ttagtttgttcaaccattatcgaaacgggtattgatgtaccaacggcaaataccattatt
attgaacgagcggatcattttggcttggctcagcttcatcaattacgtggacgagtaggg
cgttcacatcatcaggcttatgcttatttgcttacgccaccgccaaaaatgatgacaaaa
gatgctgaacgccgtctagatgcgttagaaaatcttgataaccttggggctggttttatc
ttggcaacccacgatttagagattcgtggtgcaggcgaattactcggaaatgaacaaagc
ggacaaatcgaaagcatcggtttttcgctttatatggaattattggatgcggcggttaaa
gcgttaaaagaagggcgagaaccatccttagaagaactgacgcaacaacaagcggatatt
gaattgcgcgttcctgctttactgcctgatgattatctaggagacgtgaatatgcgttta
tccttttataaacgcattgctgcagcagagagtaaagcagaattagatgaattaaaagtc
gagttgattgacagatttggattattgcctgatgcaacgaaaaacttattacaaattgca
gagttgcgtttattggttgagccgttaaaagttgtgcgaattgatgctggaacacaaggc
ggttttattgagttttcagcaaaagcacaagtgaatccagataaatttattcaattaatt
caaaaagaacctattgtgtatcgatttgatggtccattaaaatttaagtttatgaaagat
ctatccgataacaaagtgcggttagaatttgtggtggatttgttaagaacgattgctgca
taa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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