KEGG   Haloarcula marismortui: rrnAC1875
Entry
rrnAC1875         CDS       T00211                                 
Symbol
tfbD
Name
(GenBank) transcription initiation factor IIB
  KO
K03124  transcription initiation factor TFIIB
Organism
hma  Haloarcula marismortui
Pathway
hma03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:hma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    rrnAC1875 (tfbD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hma03021]
    rrnAC1875 (tfbD)
Transcription machinery [BR:hma03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     rrnAC1875 (tfbD)
 Prokaryotic type
  Archaeal type
    TFB
     rrnAC1875 (tfbD)
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Trm112p LysW-like_globular Anti-TRAP DZR_2 Cyclin_C HTH_Tnp_ISL3 Sigma70_r4 A2L_zn_ribbon DZR OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: AAV46756
UniProt: Q5V147
Position
I:1674419..1675384
AA seq 321 aa
MSEHTRTRQQREEQTTESTESESTACPECSGSLVIDDEHGETVCEDCGLVVESDEIDRGP
EWRAFDSSEKDEKSRVGAPTTNMMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWN
ERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVST
ASVYAAARQAGVPRSLDEITEVSRVEKSEIARTYRYVVRELSLEVRPADPESYVPRFASS
LELSDEAEHRARQLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADIS
EVTIRNRYHELLEAEQDLPVA
NT seq 966 nt   +upstreamnt  +downstreamnt
atgagtgaacacacacggacacgacagcagcgtgaagaacagacgacggagtcgacggaa
tcggagagcacagcgtgcccggagtgcagtggctcgctcgttatcgacgacgaacacggc
gaaacggtctgtgaggactgtggcctggtcgtcgagtccgacgaaatcgaccgcggcccc
gagtggcgcgcgttcgactccagcgagaaagacgagaagtcccgcgtcggtgcgccgacg
acgaacatgatgcacgacaaggggctgtcgaccaacatcgactggcgcgacaaggacgcc
tacggcaactccctgtcgggcaagcagcgccagaagatgcagcgcctgcgcaagtggaac
gagcgctttagaacgcgagactccaaggaacgcaacctcaagcaggccctcggtgagatt
gaccggatggcttctgcgctcggcctccccgaaaacgtccgcgaaacggccagcgtcatc
taccgccgcgcgctcgacgaggacctgctgcccggccgctccatcgagggtgtctcgaca
gcttccgtctacgccgccgcgcgacaggctggcgtcccacgctcgctcgacgagatcacg
gaggtctcccgcgtcgagaagagcgaaatcgcccggacctaccgctacgtcgtccgcgaa
ctctcgctcgaagtgcgccctgctgaccccgagagctacgttccgcgctttgcttcctcg
ctggaactgtccgacgaggccgagcaccgcgcccgccagcttctccagaacgcaaaagag
cagggcgtccactctgggaagtcaccggtcggcctcgccgccgccgcggtgtacgccgcc
gcactgctgaccaacgagaagacgacgcaggccgccgtgtctgaggtcgccgacatctcc
gaggtcactatccgcaaccggtatcacgaactgctggaagccgagcaggacctgcctgtc
gcgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (33)   

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