KEGG   Hyphomicrobium sp. MC1: HYPMC_0002
Entry
HYPMC_0002        CDS       T01557                                 
Symbol
dnaN
Name
(GenBank) DNA polymerase III, beta-subunit
  KO
K02338  DNA polymerase III subunit beta [EC:2.7.7.7]
Organism
hmc  Hyphomicrobium sp. MC1
Pathway
hmc03030  DNA replication
hmc03430  Mismatch repair
hmc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hmc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HYPMC_0002 (dnaN)
   03430 Mismatch repair
    HYPMC_0002 (dnaN)
   03440 Homologous recombination
    HYPMC_0002 (dnaN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hmc03032]
    HYPMC_0002 (dnaN)
   03400 DNA repair and recombination proteins [BR:hmc03400]
    HYPMC_0002 (dnaN)
Enzymes [BR:hmc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HYPMC_0002 (dnaN)
DNA replication proteins [BR:hmc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HYPMC_0002 (dnaN)
DNA repair and recombination proteins [BR:hmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HYPMC_0002 (dnaN)
SSDB
Motif
Pfam: DNA_pol3_beta_2 DNA_pol3_beta DNA_pol3_beta_3
Other DBs
NCBI-ProteinID: CCB63248
UniProt: F8J4S7
Position
1804..2922
AA seq 372 aa
MRLEIERGELLKALSHVTSVVERRTTIPILSNIMLKAAGDALMFKATDLEREVSESVGAK
VSAPGTLTVPAHVLHDIVRKLPDGAEIEIKRDGDKERLTITSGHSRFSLQTLSADDFPDL
AVGEIGHEFTMEAGDLKRLIDKTKFAISTEETRYYLNGIYLHPAETDGTKTLRAVATDGH
RLAQVELPLPKGAEGMPGVIIPRKTVHELTRLLEDSSAKVKVGVSQTKVRFEIGSVVLTS
KLIDGTFPDYGRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVGKDKLILTV
NNPEGGSATEEIPVGYSAGPLEIGFNARYLLDIADQLEGEDARFLLADPGSPTMVRDSSD
ASALYVLMPMRV
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgcgtctcgagatcgaacgtggggaactcttgaaggcgctcagccacgtcacaagcgtc
gtcgaacggcggacgacgatcccgatcttgtcgaacatcatgcttaaggccgcaggcgat
gcgttgatgttcaaggcgacggatctcgaacgcgaggtgagcgagagcgtcggtgccaag
gtttcggcgcccggcacgctgacggttccggcgcatgtgctgcacgacatcgtgcgcaag
ttgccggacggtgccgagatcgagatcaagcgcgacggcgataaagaacgtctgacgatc
acgtcggggcattcgcgcttcagcctgcagacgctgtcggccgacgatttcccggatctc
gcggttggcgagatcgggcacgagttcacgatggaagccggcgacttgaagcggctcatc
gacaagacgaaattcgcaatttcgacggaagaaacgcgctactatctcaatggcatctat
ctgcatccggctgagacggacggcacgaagacgctgcgtgctgtcgcgaccgacggtcat
cgcctggcgcaggtggaactgccgctgccgaagggcgcggagggcatgccgggcgtcatc
attccgcgcaaaacggtgcacgagttgacgcggctgctcgaagattcgagcgcgaaagtg
aaggtcggcgtgtcgcagacgaaggtgcggttcgagattggctcggtcgtgctgacgtcg
aagctgatcgacggtacgttccccgattacggccgcgtcattccgcacaacaacgacaag
gaaatgaaggtcccgaacgcgtcgttcaagagcgccgtcgatcgcgtgtcgacgattgca
agcgagcgcgggcgtgcggtgaagctcaatgtcggcaaggacaagctgatcctgacggtg
aacaatccggaaggcggcagcgcgacggaagaaattccggtcggctacagcgctgggccg
ctggagatcggtttcaacgctcgctatctgctcgacatcgccgatcagctcgaaggcgag
gatgcgcggttcctgctcgccgatcccggttcgccgacgatggtgcgcgacagcagcgac
gccagcgcgctctacgtgctgatgccgatgcgggtttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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