KEGG T01557: HYPMC

Hyphomicrobium sp. MC1: HYPMC_3868

Entry

HYPMC_3868 CDS T01557

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

hmc Hyphomicrobium sp. MC1

Pathway

hmc03410	Base excision repair
hmc03420	Nucleotide excision repair
hmc03430	Mismatch repair
hmc03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:hmc03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:hmc03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:hmc03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:hmc03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N mRNA_cap_enzyme

Other DBs

NCBI-GI:

338740682

NCBI-GeneID:

10892346

UniProt:

F8J5G8

Position

3705630..3707681

AA seq 683 aa
MRVFARLLDSLVYTQSRNRKVALLGHYFRTAPDPDRGWALAALTDGVPIRIPLRRMLSDL
VSRFVDPVLYRLSRDYVGDTAETVSLLWPDDRVVVATPDVAEAAETQDDVPEKPKQLVLD
LTPTARQSPTARLTPTARLTPTARLTPTARLTPTPSPSPQGGGESFTSPSPRVREEGWGE
GQPWPNVSAPRPLPVEEGESDNGNSHLPSTMGVPTSPLPLTGRGRGWGEAGHNSGEPPEL
ALGAVIEAMADGTTAQRTERLGHLLDQLDATGRWALLKLIGGAPRVGVSARLARTALAEC
YGRDVSEIEEIWHALTPPYLDLFQWLDGKAERPDPGSKPVFRPVMLAHPIEEEDWPRLSP
EDFSAEWKWDGIRVQIAARGGEVKMFSRQGDDISGAFPEIRSAFHGHDCVVDGELLVMRE
GEIAPFNDLQQRLNRKTVTAKMMQMYPPHVRLYDLLFDGAEDLRGLSFEDRRARLEAWHA
KHHPRLTDISALVAFKTFEELGELWASARAEGIEGLMLKRRASVYQAGRVKGEWFKWKRA
ALTLDCVLMYAQRGSGKRSSYYSDYTFGVWKTDDNGEKQLVPVGKAYSGFTDEELLELDK
WIRGHTTEAFGPVRAVEPELVFEVAFDAVQPSTRHKSGVAMRFPRIHRIRWDKPAAEADT
LESVLRLIGGATAATTAEQSRLA

NT seq 2052 nt +upstreamnt +downstreamnt
atgcgcgtattcgcccgtctgctcgatagtcttgtctatacgcagagccgcaatcgcaaa
gtcgcgctgcttggccattactttcgaacggcgcctgatcccgatcgcggctgggcgctc
gcggcgctgacggacggcgtgccgatccgcattccgctgcggcgcatgttgagcgatctc
gtctcgcgtttcgtcgatccagtgctttatcggctatcgcgcgactacgtcggcgacacg
gcggagacggtgtcgctgctctggccggacgatcgggttgtcgttgcgacgccggacgtt
gcggaggctgccgaaacccaagatgacgtgccggaaaagccgaagcagcttgttctggat
ctcacccccaccgctcgtcagtcccccaccgctcgtttgacccccaccgctcgtttgacc
cccaccgctcgtttgacccccaccgctcgtttgacccccacccctagcccctccccgcaa
gggggaggggaatcgttcacttctccctcgccccgcgtgcgggaagagggctggggtgag
gggcagccgtggccgaatgtttccgcgcctcggcctctccccgtggaggaaggagagagt
gacaacgggaactctcacctgccctccacgatgggcgttcccacttctcccctccccttg
acggggaggggtcgggggtggggtgaagcgggacataactcaggcgagccgccggagctt
gcgcttggcgcggtcatcgaggcgatggcagatgggacgacggcacagcgcaccgagcgg
cttggccatctgctcgatcaactcgatgcaactggacgttgggcgctcctgaaactcatc
ggcggggctccgcgcgtcggcgtgtctgcacgactggcgcggacggcgctggcggaatgc
tacggtcgcgatgtctcagagatcgaagagatctggcacgcgctgacgccaccctatctc
gatctcttccaatggctcgacggcaaagccgagcggcccgatcctggctcaaagcccgtc
ttccggccggtcatgcttgcgcatccgatcgaggaagaagattggccgcggctttcgccg
gaagatttttcggcggaatggaagtgggacggcattcgcgtgcagatcgcggcgcgtggc
ggcgaggtgaaaatgttctcgcgccagggcgatgacatctctggcgcgtttcccgaaatt
cgcagcgcctttcatgggcacgattgcgtcgtcgatggcgagttgctcgtcatgcgcgag
ggcgagatcgcgccgttcaacgacttgcagcagcgtctcaaccgcaagaccgtgacggcg
aagatgatgcagatgtatccgccgcatgtgcggctctacgatctgttattcgatggagcg
gaagacttgcgcgggctgtcgtttgaagaccggcgcgcacggctcgaagcgtggcacgcg
aagcatcatccgcggctgacggatatttcggcgctcgttgcattcaagacgtttgaagag
ctgggcgagttgtgggcgtcggcgcgagcggaaggcatcgagggcctgatgctgaagcgg
cgcgcgagcgtttatcaggcaggccgcgtcaaaggcgaatggttcaagtggaagcgcgcg
gcgctaacgctcgactgcgtgctgatgtacgcgcagcgcggctcgggcaaacgttcgtcg
tactattccgattacacgttcggcgtctggaagaccgacgacaacggcgagaagcagctc
gttccggtcggcaaagcctattcgggatttaccgacgaagaactgctcgaactcgacaaa
tggatcagggggcacacaacggaggcgttcgggccggtgcgcgccgtcgagccggagctt
gtgttcgaagtggcgttcgatgccgtgcagccgtcgacgcggcacaagtcaggcgtcgcg
atgcggttcccacgcattcaccgcatccgctgggacaagcccgcggccgaagccgacact
ctggaaagtgttctgcggttgatcgggggcgcgacggccgcaacgactgcggagcaatca
cgtctcgcgtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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