KEGG   Hydra vulgaris: 100207691Help
Entry
100207691         CDS       T01080                                 

Gene name
lamc1
Definition
(RefSeq) laminin subunit gamma-1
  KO
K05635  
laminin, gamma 1
Organism
hmg  Hydra vulgaris
Pathway
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:hmg00001]
 Environmental Information Processing
  Signaling molecules and interaction
   04512 ECM-receptor interaction
    100207691 (lamc1)
Cell adhesion molecules and their ligands [BR:hmg04516]
 1. Immunoglobulin Superfamily
  Neural system
   Enzymatic CD
    PTPRF, LAR; receptor-type tyrosine-protein phosphatase F [KO:K05695]
     Laminin-1 Extracellular matrix (ECM) components
      100207691 (lamc1)
  Others
   LU; Lutheran blood group glycoprotein [KO:K06578]
    Laminin-10 Extracellular matrix (ECM) components
     100207691 (lamc1)
    Laminin-11 Extracellular matrix (ECM) components
     100207691 (lamc1)
   MCAM, CD146; melanoma cell adhesion molecule [KO:K06534]
    Laminin-8 Extracellular matrix (ECM) components
     100207691 (lamc1)
   CXADR, CAR; coxsackievirus and adenovirus receptor [KO:K06788]
    Laminin-1 Extracellular matrix (ECM) components
     100207691 (lamc1)
 2. Integrin Family
  Beta1 integrins
   VLA-1
    ITGB1; integrin beta 1 [KO:K05719]
      100207691 (lamc1)
     Laminin-2 Extracellular matrix (ECM) components
      100207691 (lamc1)
   VLA-2
     Laminin-1 Extracellular matrix (ECM) components
      100207691 (lamc1)
   VLA-3
      100207691 (lamc1)
     Laminin-10 Extracellular matrix (ECM) components
      100207691 (lamc1)
     Laminin-11 Extracellular matrix (ECM) components
      100207691 (lamc1)
   VLA-6
     Laminin-1 Extracellular matrix (ECM) components
      100207691 (lamc1)
     Laminin-8 Extracellular matrix (ECM) components
      100207691 (lamc1)
   VLA-7
     Laminin-1 Extracellular matrix (ECM) components
      100207691 (lamc1)
  Beta4 integrins
   alpha 6 beta 4
    ITGB4; integrin beta 4 [KO:K06525]
     Laminin-1 Extracellular matrix (ECM) components
      100207691 (lamc1)
 7. Others
  DAG1; dystroglycan 1 [KO:K06265]
   Laminin-1 Extracellular matrix (ECM) components
    100207691 (lamc1)
   Laminin-2 Extracellular matrix (ECM) components
    100207691 (lamc1)
  APP; amyloid beta A4 protein [KO:K04520]
   Laminin-1 Extracellular matrix (ECM) components
    100207691 (lamc1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
NCBI-GeneID: 
Position
Un
AA seq 1532 aa AA seqDB search
MNFSLLSVFISLNFVSYIFNQDVEPEYGRAIQCKRDDGVSQRCMPVFENIAFDKDIVANN
TCGLHKPEQYCVQTGTSGAKKICDYCDDKNPGQRHPANLMTDIKLEENPTWWQSETLLEN
KKGVHLILDLKKKYHVAFIRIRFHTIRPHSFSIYKKSTYNPNEEWVPYQYYSRTCEETYG
VPNKATVSISNQKVALCTDEYSGLIPLSGGNVAFLTLDNRPGKSEFDKYKELQDWVTVTA
LKINLDQLNTFGDEVFGDPKVLKSYYFAVSDIAVGGRCHCHGHASTCAHLQGKLYCECDH
NTAGMDCEKCLPLFNDRPWRAAQDSANPCKACDCNGLADECVFDEQLWIDSSYQSGGRCI
NCQKNTAGIHCEKCKDNHYRRDGEIACHPCGCNKVGSRTSSCSSEGRCVCHSGVIGDKCD
QCKSGYYDFSPKGCSRCDCDVQGSIGVNCDATGQCQCKENVIGKRCNQCAPNHFDLDARN
PKGCKACFCYGHGISCEGVKGVGKKIITSSFDSDADGWTLQDELGNDYSKNIQWDSNGRY
VLIKSIPNKVLYMVAPKKFLGNRLSSYAKSFSFLYGIFLQNGDPDLQTSDKDIIFEGDGE
VAYFSISHQNNNKPAGRFINFEYILLEPEGMPTFDFQKLLSNVTAIKIRVTYLYPRSGAI
NDIMLESTQYVSPDSDGQVFWQEKCVSKQGHTGDLSENCEIGYNRAEPGSGPFGKCVPCR
CNNHTNYCHPETGECKCEDNTSGKNCENCLEGYYGNPTNGHADDCKLCPCIFGSQCILIS
DHIKCTNCPVGHTGDLCEICDDGYFGIPTKNVKSSRCQKCDCNENVDLNAIGNCDHKTGE
CKKCIYNTMNGPEKKCELCSVGYYGDALAEPKGNCTACKCFESGTIVPLGFKSGDPIPCD
SNGNCQCRKNVLGKQCNTCPSGHWNIEAGCEKCECNQIGSIGNECDIKTGSCKCKPGVTG
RKCDQCSTGFYQFSLTGCEACNCHPEGSKNQNCSSTGICDCLPGVLGLKCDKCPENKYNL
SLGCTVIVGLEAMVSKSEGAATTSMTKTKEAEDIIELIKKLLKEIEDKIKNNKDHVNSHS
VNTNMQNDTAKILKEIAEEARKLANRQEKESNEVNQIAITAYNISVDALEQAQNAKTVEE
KLYNKLVNMDKNFEESMTIANEALSLIYKTKNNSLTVLEDAKDLILEAKKDLPDFMINKT
LDKTSVIKNSSNELNENSLSLINENAVIVSNLQISEKEARDLMEKGVSLRNQSDELHLLA
INASQEAANAQAIGAKVAKEAQDMLETLKGFNENIKRSKANASEALKLIPLIEKLIADAN
ITGKIASENADMSIVDTTASLSLSRDAVKSVSQANIDLDDIISQLRALLNEITSFVSNEL
NTTNKNIHSVDKSLDVYRKQAQSEAAAIEDASSKILFAKLNASKAQSDLSNSLDDVEELV
ATIENLNFIDMPTLLAAESRLANASAIIKGQIASDINYLEIKLKEQESLITQYNLDLEPL
RKASQKTEQLFDFIPRESCYKPESKLEGGDQP
NT seq 4599 nt NT seq  +upstreamnt  +downstreamnt
atgaactttagtcttttgtctgtttttatctctttaaactttgtttcttatatttttaat
caagatgttgagccagagtacggtcgagctatacaatgtaaaagagatgatggagttagt
cagcgttgtatgcctgtatttgaaaatatagcttttgataaagatattgtagcaaataat
acatgcggcttgcacaaaccagaacagtactgcgttcagacaggaacctcaggagctaag
aaaatttgtgactattgcgatgataagaaccctggacagaggcatccagctaatctcatg
accgatataaaactggaagaaaatcctacgtggtggcaatctgaaacacttttagaaaat
aaaaagggtgttcatttgattttagatttaaaaaaaaaataccacgtggcatttattaga
ataagatttcacacgattcgtccacattcattctctatttacaagaaatcaacctataat
cctaatgaagaatgggttccttatcaatattattcaagaacttgtgaggagacatatgga
gtacctaataaggctacagtatcaataagcaatcaaaaagtggcattatgcaccgatgaa
tacagtggtcttatccctctatccggcggaaacgttgcttttttaacactagataacaga
ccaggaaaaagtgagttcgacaaatacaaagaactgcaagattgggtaacagtgacggcc
ttaaaaataaacttagaccagttaaacacatttggagacgaggtttttggagatcctaaa
gtattaaaaagttactactttgccgtttctgatattgctgttggaggtcgctgccattgc
catggtcatgcttcaacgtgtgctcatttacaaggtaaactttattgcgagtgcgaccac
aatactgctggtatggattgcgaaaaatgtttacctttgttcaatgatcgtccttggaga
gcagcgcaggattcagccaatccttgcaaagcttgtgattgcaatggactggcagatgag
tgtgtatttgatgagcaactatggattgattcaagttatcagtcaggaggaagatgcatc
aattgccaaaaaaatacagctggtattcattgtgaaaaatgtaaagacaaccattatcga
agagatggtgaaattgcttgccatccttgtggatgtaataaagttggttctcggacatct
agctgtagtagtgaaggacggtgtgtttgtcattctggtgttattggtgataagtgtgac
caatgcaagagtggttactatgatttctcccctaaaggatgcagtcgttgtgactgtgat
gtgcaaggcagcattggagtaaattgtgatgctactggacaatgtcaatgtaaagaaaat
gtaattggtaagcggtgtaaccaatgtgcaccaaatcattttgatcttgatgctcgtaat
cccaaaggatgcaaagcttgtttttgttatggtcatggtattagttgtgaaggtgttaaa
ggtgttgggaaaaaaataatcacttcctcatttgatagtgatgctgatggttggactctt
caagatgagttaggaaatgactactccaaaaacatccagtgggatagcaatggtcgttat
gttcttataaaatctattcctaacaaggttctatacatggttgccccaaaaaaatttctt
ggaaatcgtcttagcagttatgcaaagtctttttcatttctttatggaatttttttacaa
aatggtgacccagatttacagactagcgataaagatattattttcgaaggtgatggggaa
gttgcttatttctcaatttctcaccaaaataataataaacctgctggaagatttattaat
tttgaatatattcttcttgagccagaaggaatgccaacttttgatttccaaaaattgcta
tcaaatgttactgctataaaaatccgtgttacttacttatatcctcgcagtggtgccatt
aatgacataatgttagaatctacacaatatgtttcacctgactctgatggtcaagtattt
tggcaggagaaatgtgttagtaaacaaggacacactggagatctaagtgaaaattgcgag
ataggctataatagagctgaaccagggtctggaccatttggaaagtgtgttccttgccga
tgtaacaatcacacaaattattgtcacccagaaacaggagaatgtaagtgtgaagataat
acttcaggaaaaaattgtgagaattgtttagaaggatattatgggaatccaacaaatgga
catgcagatgattgcaaactatgcccatgtatttttggaagccagtgtattttgattagt
gatcacatcaagtgcacaaactgtcctgttggacatactggggatttatgtgaaatttgt
gatgatggttatttcggtatacctacaaaaaatgtaaaaagctcaaggtgtcagaaatgt
gattgtaatgagaatgttgacttgaatgccattggaaattgtgaccacaaaacaggagaa
tgtaaaaagtgtatttataatactatgaatggtcctgaaaaaaaatgtgagctttgttct
gttggatattatggtgatgctcttgctgaacctaaaggaaattgtacagcttgtaaatgc
tttgaaagtggaactattgttcctttgggattcaagagtggcgatccaataccatgcgac
tctaatggaaactgtcaatgcaggaaaaatgtattgggtaagcaatgtaatacttgtcca
agtggtcattggaacattgaagctggctgtgaaaaatgtgaatgtaatcagataggatca
attggaaatgagtgtgatattaaaacaggaagttgcaaatgtaaaccaggtgttacagga
agaaagtgtgatcaatgcagtacaggattttatcagttttctttaactggatgtgaagca
tgcaactgccatccagaaggatcaaaaaaccaaaactgcagcagtactggaatctgtgat
tgtttacctggagtgctaggactaaaatgtgataaatgtcctgaaaacaagtataatctc
tctcttgggtgcactgttattgttggtttggaagcaatggtatcaaaatctgagggtgct
gccacaactagtatgacaaaaactaaagaagctgaagatataattgaactaattaaaaag
ctactcaaagaaattgaagataaaataaaaaataacaaagatcatgtcaactcccacagt
gtaaatactaatatgcaaaatgacacagcaaaaattttaaaagaaattgctgaggaggca
cgtaaacttgctaatagacaagaaaaggagtccaatgaagttaaccaaattgcaattaca
gcatataatatatcagttgatgcacttgaacaagcacaaaatgcaaaaacagtagaagaa
aaattatataacaagctagttaacatggacaaaaattttgaagaatctatgactatagca
aatgaagctctttcactgatatataaaacaaaaaataattcattaaccgttttagaggat
gcaaaagatttaattctagaagcaaagaaagacctgcctgactttatgatcaacaagaca
ttagataaaacctctgtaattaagaacagctcaaatgaactaaatgaaaattcattgtct
ctcatcaatgagaatgctgttattgtttcaaatcttcaaataagtgaaaaagaggctcgt
gatttaatggaaaaaggagtttctttacgaaatcagtctgatgaactgcatcttcttgct
ataaatgctagccaagaagcagctaatgcacaagctattggagccaaagtagccaaagaa
gcgcaagatatgttagaaactttaaagggttttaatgaaaatatcaaacgatcaaaagcg
aatgcgtctgaagcattaaaactaataccattaatagaaaaacttatagctgatgctaat
atcaccggaaaaattgcatctgaaaatgctgatatgtctatagtagacacaacagcttct
ttgagtttgtcaagagatgcagtcaagtcagtatcacaagcaaatatagatcttgatgat
ataatctctcaattgcgagccttattaaatgagataacgtcatttgtttcaaatgagtta
aacacaacaaacaaaaatatacactcagttgacaaatcgcttgatgtttatagaaaacaa
gcccaaagtgaagcagctgctatagaagatgcatcttctaaaatactttttgcaaaactt
aatgcatcaaaggcacaaagtgatctgtccaattcattagatgatgttgaagagctagtg
gcaaccatagagaatctaaacttcatcgatatgccaacattgttagctgctgaaagtcgt
cttgctaatgcttctgcgataataaaagggcaaatcgcttcggatataaattatttagag
attaagttaaaagagcaagaatctctcatcactcaatacaatcttgatctggagcctttg
cgaaaagcttcacagaaaactgaacagctatttgactttattccaagagaatcttgttat
aaaccagagagtaagttagaaggtggagaccaaccgtag

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