KEGG   Hydra vulgaris (swiftwater hydra): 100211403
Entry
100211403         CDS       T01080                                 
Name
(RefSeq) helicase SKI2W
  KO
K12599  antiviral helicase SKI2 [EC:3.6.4.13]
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100211403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmg03019]
    100211403
Messenger RNA biogenesis [BR:hmg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100211403
  mRNA degradation factors
   3'-5' decay
    Ski complex
     100211403
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel Helicase_C MTR4-like_stalk ResIII
Other DBs
NCBI-GeneID: 100211403
NCBI-ProteinID: XP_047135684
Position
6:complement(54881840..54954687)
AA seq 1269 aa
MDVQLRIAEEYKINSSLLLDELKFGFVEFGISGHVKAIANEEKILPHSTLPIGVPPLLPD
LKYELETFLLSPLDLPIHAFQNHQRSWLREKNLDNMFDAVMLPHPTDICMERDPKTGKLK
GYQEVLCHDVGLTAQNSMSMNRKPGPLTDSVKGESSNKPFWPGGVFFSEALLKTVTQPNS
DEIFEVKKENYLTRPPGFSFDISFDNIERVSLADSSTNANTISINDIISNDIDLTSLYIN
IDDDEQVVEAQESPVDVALLVTDDISSQLLQVEDDFPSKRVKDEEKKWATLDDFTDVKDF
HRLVIDMAFKFPFELDVFQKRAILHLEKHENILVAAHTSAGKTVVAEYAIALAQKHMRKA
IYTSPIKALSNQKFRDFRDTFPEVGLLTGDVQIKPEATCLIMTTEILRSMLYNGSDVIRD
VEWVIFDEIHYINDLERGVVYEEVLIMLPSHVGIILLSATVPNTLEFASWIGKTKQKEVY
VVQTKMRPVPLEHYLYTGNSNKTSNELFCILDQKGNFLLSGYRAALNAKKERASKVDESY
GPKGVRQGNPQADKSVWLSLLSMLQKKDQLPVVAFTLSKKKCDQNAEKVSSVELVTSTER
SHIISFFNKSLRQLKGSDRQLPQVLWLEELLKNGIGVHHSGILPILKEIVEMLFSRGLLK
ILFATETFAMGVNMPARTVVFDSTRKFDGNNFRDLHSSEYIQMAGRAGRRGLDNTGMVIL
LCKGDVPETSDLNKMMLGTPTKLTSQFRLTYYMILNLLRVKQLTVQDMMKRSFSEYYLQK
DAPENEKKLEELRIKCKQLKDIDCPVCSIDLKAYYLAWTECYQLQKQIKNILFSSMQCQK
LLVPGRLLLVTNANHKRSLSVILQIGGLGNLSSFKGLSSKNPLEKLYTVLILCEKNYEEM
KMSDISTTKVSQEEEVKHPNEMFLQNDLFIPKGQCGQIVEEIIAADICEIVNKVIKVDLE
KILENHKKRLIPRFRSDPPSQSTVIAGQQLFNLAKDFNDKICPVMHPIHDLCLNEIKFVE
KHKKFERILPSLHCFNCLDCPNIIKHFSLMQSNMQVKEDVAMLEFRLSDENLNLMQEYNQ
RIEVLKTLNYIDKEMNLQHKGRVAFEISTHEVMITELLINNVLTDLHPSEIVAVLSCFVF
EQKKSSPPTLTDNLQKVVNTVKQIAKTIAVCQKKQGLNVTVEEFIEELHFGLVEVVYEWA
RGMSFKDIMNLTDVSEGNIVRCIQRLDETCRDVRKAAHVIGVQALCDKMEEGMSLIRRDV
VFAASLYTS
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggatgtccagttaagaatagctgaagaatataaaataaattcatcactcttgctagat
gagctgaagtttggtttcgtagaatttggtatttctggtcatgtgaaagccattgctaat
gaagaaaaaatattacctcattctacacttccaatcggtgttcctccattacttccagat
ttaaaatatgaacttgaaacatttttattatcaccacttgatttgccaattcatgccttc
caaaatcatcaaaggtcttggctacgtgaaaaaaatttggacaatatgtttgatgctgta
atgcttcctcaccctacagatatttgtatggaacgagatcctaaaactggaaagctcaaa
ggataccaagaggttttatgtcatgatgttggtctaactgctcaaaattcaatgtcaatg
aatagaaaacctggtcctttaactgattcagttaaaggtgaatcttcaaataaacctttt
tggcctggtggcgtgttcttctctgaagctcttttgaaaacagttacacaacctaacagt
gacgaaatatttgaagtaaaaaaagaaaattacttaacaagaccaccaggattttcattt
gatatttcatttgataacattgagagggttagtctagctgattcctcaactaatgcaaat
acaataagtattaatgatataatttctaacgatatcgatttgacatctttatacatcaat
attgatgatgatgagcaagtagttgaagcccaagaaagccctgttgatgttgcattattg
gtgacggatgatatatcttctcaacttttacaggttgaagatgatttcccttcaaagaga
gttaaagatgaagagaagaaatgggcaaccctagatgatttcacagatgtaaaggatttc
catagactagtaattgatatggcattcaaatttccttttgagttagatgtgtttcaaaag
cgagctatacttcatcttgagaagcatgaaaacattttggtggctgctcatacatctgct
ggaaaaacagtagttgcagaatatgcaattgcattggcacagaaacatatgagaaaagct
atctacacttctcctataaaagctttatccaatcagaagttcagagattttcgggataca
tttcctgaagtaggtttgttgacaggtgatgttcaaatcaaacctgaagcaacctgtctt
ataatgactaccgaaattttaagatctatgttgtacaatggctcagatgttataagagat
gtggaatgggtgatattcgatgaaattcactatataaatgatttagagagaggtgtggtt
tatgaagaagtgctgattatgcttccttctcatgtgggaatcatcttgttgtctgctact
gttccaaatacattagagtttgcttcttggataggaaaaactaaacaaaaggaagtttat
gtagttcaaacaaaaatgcgtcctgttccattagaacactatctttatactggcaatagc
aacaaaacttcaaatgaacttttttgtatattggaccaaaaaggaaattttcttttaagt
ggctatagagctgcattaaatgctaaaaaggaaagagccagtaaagtagatgaaagttat
ggcccaaaaggtgttcgacagggaaatcctcaagcagataaaagtgtttggttgtcttta
ttgtcaatgttgcagaagaaagatcaacttcctgtagtggcttttactctatcaaaaaag
aaatgtgatcaaaatgcagaaaaagttagcagtgttgaactagtaacatctactgagcgc
agtcatataatttcattttttaacaaatctttgaggcagttaaaaggttcagatcgccaa
ctacctcaggttttatggctggaagagctattaaaaaatggtataggtgttcatcatagt
gggattcttccaattttaaaagaaattgtagaaatgttattttcaagaggtctactcaag
attttgtttgcaactgaaacatttgctatgggtgtaaatatgccagctcgtacagttgtt
tttgactctacacgcaagtttgatggtaataatttcagagacttacattcaagcgagtat
atacagatggcaggacgtgctgggcgtcgtggattggataacacaggaatggttatttta
ttatgcaagggagatgtgccagagacttctgatttaaataaaatgatgctgggtactcca
actaaactaacgtcacaatttcgcttaacatattacatgattttaaacctgctacgtgta
aaacaattgacagttcaagacatgatgaagcgcagcttttctgagtattacttgcaaaag
gatgctcctgaaaatgagaaaaaattagaggagcttcgcattaagtgtaagcaattaaaa
gatattgattgtcctgtttgttctattgatttaaaagcttattacttggcatggactgaa
tgctatcaacttcagaaacaaattaagaatattttattctcttcaatgcaatgtcaaaag
ttacttgtccccggaagacttttgctagtaaccaatgccaatcataagcgcagtttaagt
gtcattttgcagataggtggattaggaaatctatcaagttttaaaggtttatcttcaaaa
aatcctttagagaagctttacacagttttaattttgtgcgagaaaaactatgaagagatg
aaaatgtcagacatttcaacaacaaaagtttcacaagaagaagaagttaaacatcctaat
gaaatgtttcttcagaatgatttatttatacctaaaggtcaatgtggacaaatagttgaa
gagataattgcagcagacatatgtgaaattgtaaataaagttataaaagtagatttggaa
aaaattttagaaaatcacaaaaaaagactcattccaagattcaggtcagatcctccttca
cagtcaactgtaattgcaggtcagcaactttttaatcttgcaaaagattttaatgataaa
atttgtccagtcatgcatcctatacatgatttatgcttaaatgagataaagtttgtagaa
aaacataaaaaatttgaacgcattttgccatcactccattgcttcaattgtcttgattgt
cctaatattattaagcatttctctttaatgcaaagcaacatgcaagtaaaggaagatgtt
gcaatgttggaatttcgattgtctgatgaaaatttaaatcttatgcaagaatataatcaa
aggattgaggtactcaagactttaaactatattgacaaagaaatgaatcttcaacataaa
ggtcgcgtggcatttgaaataagcacccatgaagtaatgataacagaacttcttattaat
aatgtgcttacagatctacacccatcagaaattgtggcagttttatcttgttttgttttt
gaacagaaaaaatcctctccaccaacgctcacggacaacttacagaaggtggttaatact
gtgaagcaaattgcaaaaactattgctgtttgtcagaaaaagcaaggtcttaacgtgaca
gtagaagaattcatagaagagttacactttggtttggtagaagttgtgtatgagtgggca
cgtggaatgtctttcaaagatataatgaacctcacagatgtctctgaaggaaacattgtg
cggtgcattcaaagattggacgaaacctgtcgagatgtgcgaaaggctgctcatgtgatc
ggtgttcaagcactttgcgataaaatggaggaaggaatgagtttaattcgacgagatgta
gtatttgctgcaagtctttacacgtcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (72)   

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