KEGG   Hippea maritima: Hipma_0465
Entry
Hipma_0465        CDS       T01456                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hmr  Hippea maritima
Pathway
hmr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hipma_0465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmr03019]
    Hipma_0465
   03016 Transfer RNA biogenesis [BR:hmr03016]
    Hipma_0465
Enzymes [BR:hmr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Hipma_0465
Messenger RNA biogenesis [BR:hmr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Hipma_0465
Transfer RNA biogenesis [BR:hmr03016]
 Prokaryotic type
  tRNA degradation factors
   Hipma_0465
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 AbiEi_4 HTH_11
Other DBs
NCBI-ProteinID: AEA33437
UniProt: F2LUB1
Position
468116..470185
AA seq 689 aa
MSRYAIAILNFLSAKDYKPLSGSELRKALGVSKKRKTAFYKELRRLKKEGKIKKISKSRY
VIALKKSQTPLLKGTLLKRSGFFYLRKGEDEVKLPQLINTVNATEGDEIIVKLQKSNIGI
TSKVVKVLKRRLKNVIGYLVKTPRGWIVNPTDRKVPFVISVGKIDKKLKEGWLVLVEIIS
FVEGKHTTVKGKIVKVYGDPYQLKIDKEVVIDKFGLPYEFSTEVERELEMIAEPTEDEFR
KRTDFRNLPTITIDGEDARDFDDAIDVERTQTGYRLYVHIADVSNYVKKGMSLDKEALQR
GFSVYFPEAVIPMLPFKLSNDVCSLVPDEDRLSVSVIMEISKKGVIKSYDIKESVIRNKR
RMTYKGVQGILDGQIKDEQWLKDRLVIMRELAKTLRSRRFKKGSLDLDIPEPKVIVEDDK
IIEIKEREHLFSHSIIEEFMLAANLCVADFLSRHYEKYIRRVHDDPDPVKLSVLIAFLRK
MGVKFELQDEITSKELQKILKSIKDEKLKKIVSQLMLRSLKRAEYSTQSKGHFALHFENY
THFTSPIRRYPDLVVHRMIKAVLEKKRESFDNLEDITSTIKERELTTENAMFYMNDIKAA
HFMRQYIGEVFDATITTIIPSGFFVRLKEHFVEGFVAVSSLKDDYYEYVEYMYAMVGKRK
KKIFRLGDDVRVMVVNVDKFAGEIDFTVA
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgtcaagatatgctatagctattttaaactttttgtcggcaaaagactataaaccgtta
agcggctctgagttgcgtaaggctttgggtgtttctaaaaaaaggaaaacggccttttat
aaggaactaagaagactaaaaaaagaaggaaagataaaaaaaatatcaaaaagtagatat
gtcatagctttaaaaaaatctcaaacgccccttcttaagggaactcttcttaaaagaagt
ggatttttctatttaagaaaaggggaagatgaagttaaactgccccaacttattaatacc
gtaaatgcaacagagggcgatgaaataatagttaaactgcaaaaaagcaatataggaata
acatccaaggttgtaaaggtactaaaacgcaggcttaagaacgtcataggttacctggta
aaaacccccagaggatggattgttaatcctacagataggaaagtaccctttgttattagc
gtagggaagatagataagaagctaaaagaagggtggctggtattagttgagattatatct
tttgttgagggcaaacatacaactgttaaaggcaaaatagttaaagtttacggtgatcct
tatcagttaaagatagataaagaggttgttatagataaatttggcctgccttatgaattc
tcaacagaggttgaaagagaacttgagatgatagcagaaccaacagaggatgaatttaga
aaaagaactgattttaggaacttgcctacaataaccatagacggtgaagatgcgcgggac
tttgatgatgctatagatgtcgaaaggacacaaacaggctataggctttatgttcatata
gccgatgtatctaattatgtaaaaaaaggcatgagtcttgataaggaagcccttcagaga
ggttttagtgtatactttcccgaagctgttatacctatgctgccgtttaagctgtcaaat
gatgtctgctcattggttcctgatgaagataggcttagtgttagtgttatcatggaaatt
tcaaaaaaaggtgttattaaaagctatgatatcaaagagagtgtaataagaaacaagcgg
aggatgacatataagggtgttcaaggcattcttgatggccaaatcaaagatgagcagtgg
ctaaaagataggcttgtgattatgcgtgagcttgctaaaaccttacgcagtagaagattt
aaaaaggggagccttgatttggatatacccgaacccaaggtgatagtagaggacgataag
attattgaaataaaagaaagggagcacttgttttcacattctattattgaagagttcatg
cttgcggctaatctgtgtgttgccgattttttaagtaggcattatgaaaaatatattcgt
agggtgcatgatgacccagatccggtaaagttgagtgttcttattgcttttttgaggaag
atgggcgtaaaattcgaattgcaggatgaaattacatcaaaggagcttcagaaaatttta
aaatccataaaggatgaaaagcttaagaaaattgtatctcaactcatgctaaggtcttta
aaaagggccgaatactcaactcaaagcaaagggcattttgcgctccattttgaaaattac
acgcattttacctcacctataagacgctacccagatcttgtagttcacagaatgattaag
gctgttttagagaagaaaagggaatcatttgataatcttgaagatataacatcaactata
aaagagagagagcttacaacggaaaatgctatgttctatatgaacgatataaaggcggcg
cattttatgagacaatacataggtgaggtttttgatgcgactataacaactataattcca
agcggtttttttgtgagattaaaagagcatttcgttgaggggtttgtggcagtctcaagc
ctgaaggatgactattatgaatatgttgagtatatgtatgcaatggttggcaagagaaaa
aagaagatatttaggttaggtgacgatgtgagggtgatggtggttaatgtagataaattt
gcaggtgaaatagactttacggttgcttaa

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