KEGG   Hippea maritima: Hipma_1301
Entry
Hipma_1301        CDS       T01456                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hmr  Hippea maritima
Pathway
hmr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hmr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Hipma_1301
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hmr03400]
    Hipma_1301
Enzymes [BR:hmr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hipma_1301
DNA repair and recombination proteins [BR:hmr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Hipma_1301
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII MFD_D3 UB2H DUF1474 DUF6859
Other DBs
NCBI-ProteinID: AEA34259
UniProt: F2LXE5
Position
complement(1288775..1291873)
AA seq 1032 aa
MSLSSFAYKIAKTEANTIVVLKDNIEIEKFALKINYFSKFNSTGSDICKFFCYEIPPHSS
IEPSNYLVSNRLSSIYKLINSDKRLVFLTNISALIQPVISFDSFIDKVIQIKRGDVVELD
EFIKRLSELFYKRVDMVYAPGEFAKRGAIIDLFSTFYDKPMRIEFFDDEVDSIKLFYLEN
QRTFETIDEAVVLPASEYKAKEDEFGYILLENREFLSDFGFEDFVGFANIDENDINSAYR
LIEFYEDKNIFAPRIDVSKFLDKLELFQNDFSLTRLINESLSMDDKVKLLREKSKDNRVI
IACGSETRRKRVEEFLSLKGIPFKELREGRAALLPAVYLDSGYLDEGIWDKDNKIAFVSF
AELFGLTEGGFSLKRFRKPKNVEFEIGDRIVHKKYGIAQFNGLKKIKIEDKQEDFFELEF
DEGDKVYVPVYNSDALLAYHGSDGLSSLRSNKWQRNQESIKKSIKKILTELVNTYAKRQL
VKRKPYDIDLLEIKEFEAMFEYDETPDQLKAISDVKDDMSKDVPMDRLICGDVSFGKTEV
AARAIAIAVFNLKQAVFMVPTTVLALQHFKNLKDRFKSFPVEIQLLTRFSTKSERERILK
GLKQGRIDILITTHAVYSKDVEFADLGLVVIDEEHRFGVKVKEHLKSKYPHADMLYLSAT
PIPRTLNMSLNGILDISVIKTPPLERKPIETIIAKRKSSIIRDAILRELSREGRVYFVHN
SIETMDKVKSELDNLLPFAKKGIVHAKMPKNQIKSVFERFNNGEFDILISTSIIESGLDI
KSVDTIIIDDADRFGLSDLHQLRGRVGRGDRVAYAYLLYRGKLSENATKRLEYMSEFIER
GSGLNLALKDMEIRGYGNILGKDQSGKIKSVGFSTYLSLIEEAIKELKSQPTQREVEIKH
SFDVYIPDEYASSQKKVEIYKRLASIRSQDELEELKNELVDRFGKFVEPVENLFLLASLK
IAAQQVYAKKLSLSKNGVIVEFYIDANIDTDKLISLENCRFLSETSVFFPLLGKRLKTIH
RNLIDIFNSIKK
NT seq 3099 nt   +upstreamnt  +downstreamnt
atgagcttaagctctttcgcttataaaatagccaaaaccgaagcaaatacaattgttgta
ttaaaggataatatagagatagaaaagttcgctctaaagataaactatttttctaagttc
aattctactgggtcggatatatgcaagtttttctgctatgaaatcccgcctcattcttct
atagaaccttcgaattatcttgtttcaaatagattgagttctatctataaacttatcaat
tccgataaaaggttggtttttcttaccaatataagcgcactaattcaacctgttattagt
tttgatagttttattgataaggttatccaaataaagaggggcgatgttgtagagttggat
gaatttataaagaggctttctgagttgttttataagagggttgatatggtctatgcgcct
ggtgagtttgcaaaaaggggcgctataattgacctattttctactttttatgataaacct
atgaggattgaattttttgatgatgaggtagacagcataaagctattttatttggagaac
caaaggacgtttgagacgattgatgaggctgtcgttttacctgcatccgaatataaagct
aaagaagatgaatttgggtatatattgcttgaaaatagagaatttttgagcgattttggc
tttgaggatttcgtaggttttgccaacatagatgagaatgatatcaattcagcctatagg
cttatagagttttatgaagataaaaacatatttgctccaaggatagatgtgtctaaattt
ttagataaacttgagttatttcaaaatgatttttctttaacaaggcttataaatgaatct
ttgtctatggatgataaagtgaagcttcttagggagaagtccaaagacaatagagtaatt
atagcgtgtggttcagaaacaagaagaaaaagggttgaggagtttttatctttaaagggt
atcccttttaaggagttaagagagggtagggctgcacttttgcctgctgtttatctggat
agcggatatttagatgaaggtatttgggataaggacaacaagatagcgtttgtgagtttt
gctgagctttttggattaactgaaggtggattttcgcttaaacgttttagaaaacctaaa
aacgttgagtttgagattggtgataggatagttcataaaaaatacggaatagcgcaattt
aatggacttaaaaagataaaaattgaggataaacaggaagatttttttgagcttgaattt
gatgagggcgataaggtttatgtgccggtttataacagcgacgcattgcttgcctatcac
ggtagcgatggtttgagctcattaaggagtaataagtggcagagaaatcaagagagcata
aaaaagtctataaagaagattttaactgagcttgtgaatacttacgcaaaaagacaactt
gtaaaaagaaaaccctatgatattgacctgcttgagattaaagagtttgaggccatgttt
gagtatgatgaaacccctgatcaacttaaggctataagtgatgtcaaggatgacatgtca
aaagatgtgcctatggataggctaatatgtggtgatgtttcctttggtaagacagaggtt
gcagcaagagctatagcaatagccgtgtttaatctaaaacaggctgtttttatggttcca
acaacggttttggctcttcaacatttcaaaaacttaaaggatagatttaaaagttttcct
gtggagattcagcttcttactcgctttagcacaaaatcagaaagggagaggattctaaag
gggcttaagcagggaagaatagacatactcataacaacccatgctgtatattctaaagat
gtagaatttgcagatttgggtcttgttgtaatcgatgaggaacataggtttggcgttaaa
gttaaggagcatttaaagtccaaatatcctcatgccgatatgctttatttaagcgctacg
cccataccaagaacgctcaacatgtctcttaatggtattttagatatcagcgtgataaag
acgccgccgcttgagcgaaagcccatagaaactataatagcaaagagaaaatcatctatt
attagggatgctatcttaagggaattatccagagagggcagggtgtattttgttcacaac
agcatagagacgatggataaggtaaaatctgagttagataatcttcttccttttgcaaaa
aagggtattgttcatgcaaaaatgcccaaaaatcagataaaatcggtgtttgagcggttc
aataacggtgaatttgatatactcatctcaacctcaattatagagtctggcttggatata
aaatcggtcgacacaataattatagacgatgccgataggtttggtctgtctgatttgcat
cagcttaggggaagagtgggtaggggagacagagtggcttatgcctatctgctttataga
ggcaagcttagtgaaaatgccacaaagaggcttgagtatatgagtgagtttatagaaagg
ggctctggcctcaatttggccttgaaggatatggaaattagagggtatggcaatatattg
ggtaaagatcaatccggtaaaataaaatctgtgggtttttcaacctacctatcgttaata
gaggaggctatcaaagaacttaaaagtcagccaactcagagggaagttgaaataaagcac
tccttcgatgtgtatattcctgatgaatatgcatcctctcagaagaaagttgagatttac
aaaagacttgcaagtattagaagtcaggatgagcttgaagagttgaaaaatgagcttgta
gatagatttggcaagtttgttgaaccagttgagaatctttttctgcttgcgtctttaaaa
atagccgctcagcaggtctatgctaagaagttatcgctttcaaaaaatggtgttattgtg
gagttttatatagatgcaaacatagatacagacaagcttatatctttagaaaattgcaga
tttttatcggaaacctctgtattttttcctcttttaggcaaaaggctcaaaaccattcat
agaaacctgatagatatattcaattccataaaaaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (33)   

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