KEGG T01103: Hoch

Haliangium ochraceum: Hoch_1858

Entry

Hoch_1858         CDS       T01103

Name

(GenBank) ATP-dependent helicase HrpB

K03579

ATP-dependent helicase HrpB [EC:5.6.2.6]

Organism

hoh Haliangium ochraceum

Brite

KEGG Orthology (KO) [BR:hoh00001]
09190 Not Included in Pathway or Brite
  09191 Unclassified: metabolism
   99980 Enzymes with EC numbers
    Hoch_1858
Enzymes [BR:hoh01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Hoch_1858

SSDB

Motif

Pfam:

HrpB_C Helicase_C DEAD HA2_N AAA_22 AAA_19 Flavi_DEAD

Other DBs

NCBI-ProteinID:

ACY14406

UniProt:

D0LYT6

Position

complement(2557545..2560220)

AA seq 891 aa
MSARLPIDEVLPALIDALRERSSAVLLAPPGAGKTTRVPPALLDAGLAGDGEIAVLEPRR
LAARMAAQRVAEELGERVGGRVGYEVRFDRAVSAETRIRFVTEGVLTRKLLGDPGLSGVG
AVVIDEFHERHLQGDLALALLRRLQQRDRPGLRLVVMSATLDPGPVSAFLGECPVVRSEG
RQYPVELDYAAPGDDRPLAKRVAGAVRVALRHRPEQAPEQAQAQDPAGGDVLVFLPGAGE
IRAAMDACRGERGQPAGLDLGQRADLVALHGDLPAAEQDRAVRPSARRKVIFATNVAESS
ITIDGVTTVIDSGLARVARHAPWSGIPTLRVEPISQASAAQRAGRAGRTAPGRCVRLYTR
HEHDSRPAFDPPEIARADLAEAALWLRALDIDPLDGFGWYEAPPEAALRAADELLERLGA
VAGGRLSKLGRAMLRLPVHPRQARLLLEAQARGVGAEGCVLAALLGERELRLSRRSSLGG
RGPAPAALSSGPSDLLEDLDAFAAASERGAGGARAHGLDPGGLRAVDRVQRQLASALKRT
RSRELPTAPRPRTPEAVDEALQIATLAGYPDRVGRRRRPREPEIVFVGGGSATLSPTSVV
LGAEFVVAVDARERERGRGAVIHRASAVDPAWLLDLFLEHIDERDELLWNAERQRVERVA
RMVYGDLVIDEQRDPGGARRDPATAERAAEILAEAALQAGVERFCDRDAVAAWRCRVAFA
AGIAGPERIPALGEDAEREALRQMCRGCIGFDELAQRSLLDGLRAQLAAAAPEAPALVER
LAPRHVDIAGRRRVPVHYESDRPPWIESRLQDFFSMSAGPSVGGVPLTLHLLAPNQRAVQ
VSADLAGFWERHYPALRKQLMRRYPKHAWPDDPAHAPPPPPRGSGRGRKRR

NT seq 2676 nt +upstreamnt +downstreamnt
gtgtccgcccgcctgcccatcgacgaggtcctgcccgcgctcatcgacgccctgcgcgag
cgctccagcgccgtgctgctggccccgcccggcgccggcaagaccacgcgggtgccgccg
gcgctgctcgacgccggtctggccggggatggcgagatcgcggtgctcgagccgcgccgc
ctggccgcgcgcatggccgcgcagcgcgtcgccgaggagctgggcgagcgggtcggcggc
cgggtcggctacgaggtccgcttcgaccgcgcggtcagcgccgagacccgcatccgcttc
gtcaccgagggcgtgctcacgcgcaagctgctcggcgatcccgggctcagcggggtcggc
gccgtggtcatcgacgagttccacgagcgccacctgcaaggcgacctcgccctggccctg
ctgcgccgcctgcagcagcgcgatcgcccggggctgcgtctggtggtgatgtcggcgacg
ctcgatcccggaccggtgtccgccttcctcggcgaatgcccggtggtccgctcggagggc
cgccagtatccggtcgagctcgactacgccgcgcccggcgacgatcgcccgctggccaag
cgcgtggccggggccgtgcgcgtggccctgcgccaccgcccggagcaagcgccggagcaa
gcgcaggcgcaggacccggccggcggcgatgtgctggtgtttctgcccggcgccggcgag
atccgggccgcgatggacgcctgccggggcgagcgcggccagcccgcgggtctggatctc
ggacagcgggccgatctcgtggccctgcacggcgacctgcccgcggccgagcaggaccgc
gccgtgcgcccgagcgcgcgccgcaaggtcatcttcgccaccaatgtggccgagagctcg
atcaccatcgacggcgtcaccaccgtgatcgacagcgggctggcgcgcgtggcccggcac
gcgccctggtcgggcatccccacgctgcgcgtcgagcccatcagccaggccagcgccgcc
cagcgcgcgggccgcgccggccgcaccgcgcccgggcgctgcgtgcgcctgtacacgcgc
cacgaacacgacagccgcccggccttcgacccgcccgagatcgcgcgcgccgacctggcc
gaggccgcgctgtggctgcgcgcgctcgatatcgacccgctggacggtttcggctggtac
gaggccccgcccgaggctgcgctacgcgcggcggacgagctgctcgagcgcctgggcgcg
gtcgccggcggccgcctgagcaagctcggtcgcgccatgctgcgcctgcccgtgcacccg
cgccaggctcggctgctgctcgaggcccaggcccgcggggtcggcgccgagggctgtgtg
ctggcggccctgctcggcgagcgcgagctgcgcttgtcgcggcgcagctcgctgggcgga
cgcggcccggcgccggccgcgctcagcagcgggccctcggatctgctcgaagatctcgac
gcgttcgcggccgcgagcgaacgcggcgcaggcggcgcccgcgcccacggtctggatccg
ggcgggctgcgcgcggtcgatcgcgtgcagcgccagctcgccagcgcgctcaagcgcacg
cgctcgcgcgagctgccgacggcgccgcgaccgcgcacgcccgaggccgtggatgaggcg
ctacagatcgccaccctggccggctatcccgaccgcgtcggccgccggcgccggccgcgc
gagcccgagatcgtgttcgtgggcggcggcagcgcgacgctttcgccgaccagcgtggtc
ctgggcgccgagttcgtggtcgccgtggacgcgcgcgagcgcgagcgcggccgcggcgcc
gtgatccaccgcgccagcgccgtggacccggcgtggctgctggacctcttcctcgagcac
atcgacgagcgcgacgagcttttgtggaacgccgagcgccagcgggtcgagcgggtcgcg
cgcatggtctatggcgacctggtgatcgacgagcagcgcgatcccggcggcgcccgccgc
gacccggcgacggccgaacgcgcggccgagatcctggccgaggccgcgctccaggccggg
gtcgagcgtttttgcgatcgcgacgcggtcgccgcgtggcgctgccgcgtggcctttgcc
gccggcatcgcgggccccgaacgcatcccggcgctgggcgaggacgccgagcgcgaggcc
ctgcggcagatgtgccgcggctgcatcggcttcgacgagctggcccagcgctcgctgctc
gacggcctgcgcgcccagctcgcggccgcggcgcccgaggccccggccctggtcgagcgc
ctggcgccgcgccacgtggacatcgccgggcgccggcgcgtgcccgtgcactacgagagc
gatcgcccgccgtggatcgagtcgcggctgcaggacttcttcagtatgagcgcgggcccg
agcgtgggcggggtgccgctgaccctgcacctgctggcgcccaatcagcgcgcggtgcag
gtgagcgccgacctggccgggttctgggagcgtcactacccggcgctgcgcaagcagctc
atgcgccgctaccccaagcacgcctggcccgacgacccggcgcacgcgccgccgccgccg
ccgcggggttcggggcggggacgcaaacgccgctga

All links

Ontology (1)   
   KEGG BRITE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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