KEGG T01103: Hoch

Haliangium ochraceum: Hoch_6355

Entry

Hoch_6355 CDS T01103

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

hoh Haliangium ochraceum

Pathway

hoh03410	Base excision repair
hoh03420	Nucleotide excision repair
hoh03430	Mismatch repair
hoh03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:hoh03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:hoh03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:hoh03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:hoh03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

262199509

NCBI-GeneID:

8548769

UniProt:

D0LNZ9

Position

complement(8709773..8710858)

AA seq 361 aa
MNLPIPEPVEPMLAKLASSLPDGEGWLYEPKWDGFRVIVFRDGDEILLQSRDKKPLTRYF
PELEATLRAQLPSRCAFDGELVIARGDRLDFEALSARIHPAESRIAQLSEETPASLVLWD
ALCLGDEALLDTPFATRRARLEEALAGVRAPVHLTPITRDRERAADWFARFEGAGLDGVM
AKREGDVYQPKKRAMLKIKPSRTAECVIAGFRWHKNGPGTLLGSLLLGLYDQRGRLHYVG
GSSSFTAKRREELVAELAPLREGAEDGHPWLDGAPQGDDVRVPGAESRWRRSKGRDWEPL
RPERVVEVGYDHMEGLRFRHTAKFVRWRPDKAARACDFEQLDVTPPYELGEIFGQKSDSV
G

NT seq 1086 nt +upstreamnt +downstreamnt
gtgaatctgcccatccccgaacctgtcgagcccatgctggccaagctcgcgtcgtcgctg
cccgacggcgagggctggctgtacgaacccaaatgggatggctttcgcgtcatcgtgttt
cgcgacggcgacgagatcttgctccagagtcgcgacaagaagccgctgacgcgctacttc
cccgagctcgaggcgacgctgcgagcccagctcccgagccgctgcgcgttcgacggcgag
ctggtcatcgcccgcggtgaccgcctcgacttcgaggcgctgagcgcgcgcattcatccg
gccgagtcgcgtatcgcccaactgtccgaagaaaccccggcgtcgctggtgctgtgggac
gcgctgtgtctgggcgacgaggccttgctcgacacgccctttgccacccgccgcgcgcgt
ctcgaggaagccttggccggcgtgcgcgcccccgtgcatctcacgccgatcacgcgcgat
cgcgagcgcgcggccgactggttcgcgcgcttcgaaggcgccgggctcgacggcgtcatg
gccaagcgcgagggcgacgtctaccagcccaagaagcgcgcgatgctcaagatcaagccc
agccgcacggcagagtgcgtgatcgccggctttcgctggcacaagaacgggccgggcacg
ctgctcggctcgctgttgctcggcctctacgatcagcgcggtcgtctgcactacgtcggc
ggctcgtcgagtttcacggccaagcgccgcgaagagctggtcgccgagctggcgccgctg
cgcgagggcgccgaggacgggcatccgtggctcgatggcgctccgcagggcgacgacgtg
cgcgtgcccggggccgagagtcgctggcgtcgttcgaagggccgcgactgggagccgctg
cgtcccgagcgcgtggtcgaggtcggctacgaccacatggagggcctgcgctttcgccac
acggccaagttcgtgcgctggcgcccggacaaggccgcgcgcgcgtgcgacttcgagcaa
ctcgatgtcacgccgccctacgagctgggcgaaattttcggacagaagtccgatagcgtt
ggctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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