KEGG   Glaesserella parasuis SH03: JL26_11320
Entry
JL26_11320        CDS       T03301                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
hpas  Glaesserella parasuis SH03
Pathway
hpas02024  Quorum sensing
hpas03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hpas00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JL26_11320
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JL26_11320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpas03019]
    JL26_11320
   03036 Chromosome and associated proteins [BR:hpas03036]
    JL26_11320
Messenger RNA biogenesis [BR:hpas03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     JL26_11320
Chromosome and associated proteins [BR:hpas03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    JL26_11320
SSDB
Motif
Pfam: Hfq LSM Gag_p24_C Lyase_8_N
Other DBs
NCBI-ProteinID: AIK18275
UniProt: A0A084F0J3
Position
complement(2213385..2213666)
AA seq 93 aa
MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPARAISHNNNSNHAHQAAPVQSAEVVEKVE
NT seq 282 nt   +upstreamnt  +downstreamnt
atggcaaaaggtcaatctttacaagatccatacttaaatgcacttcgccgtgaacggatt
ccagtttccatttacctcgtgaatggcattaaattacaaggtcaaattgagtctttcgat
caattcgttattttattaaaaaacacagtgagtcaaatggtttacaagcacgcaatttca
accgttgtgccagctcgtgcgatttctcacaacaataactctaaccacgctcatcaagcc
gcaccagtgcaatctgctgaagtggtagagaaagtggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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