KEGG   Helicobacter pylori Lithuania75: HPLT_05525
Entry
HPLT_05525        CDS       T01896                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hph  Helicobacter pylori Lithuania75
Pathway
hph03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPLT_05525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hph03400]
    HPLT_05525
DNA repair and recombination proteins [BR:hph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPLT_05525
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HPLT_05525
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 Kinesin Microtub_bd DUF87 AAA_7 SWI2_SNF2 DUF5923 UBA AAA_22
Other DBs
NCBI-ProteinID: ADU83495
UniProt: E8QQL3
Position
complement(1103995..1105971)
AA seq 658 aa
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK
LRDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccccaagctata
gaggccttaacgaaaagcttgaaaaataacaaccattatcaaactttagtgggggttaca
gggagcggtaagacttatacgatggccaatatcattgctcaaaccaataaacccgctttg
atcatgagtcataataagaccttatgcgcgcagctttatagcgagtttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgattactaccagcctgaaagctat
atccctagaagggatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgagattgagtgcgaccacctcacttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggcaaccctgaagaatatctaaaagtcatggaaaaaatc
aaagtgggcgagaagcgcgcttataagagctttttactcaagctagtagaaatgggttat
agccgtaatgaagtggtgtttgatagggggagctttagggcgacgggggaatgcgtggat
attttccccgcttataatgacgctgaatttatcaggattgagttttttggcgatgagata
gaaaggattgcggtctttgacgctttagaaagaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgccgtagggagcgagaggttgaatttagccattaaa
agcattgaagatgagctcgctctaagattgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcgaccggt
gtgtgtaagggcattgaaaattacgcgcgccattttacgggtaaagcccctaacgaaacg
cctttttgtttgtttgattatttagggatttttgagcgggagtttttagtcattgtagat
gaaagccatgtgagtttgccgcagtttggggggatgtatgcaggggatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccaattcctttttgtgtccgctacgcccaataag
ctagaattagagctttccaaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaggtccaggatttatttgatgaa
atcaagctagtggtagccagagatgaaagggtgctcatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaggtgcgttacatgcatagt
gaaattgatgcgattgaaagaaatcacatcatccgctctttaaggcttaaagaatttgac
attttaatagggatcaatcttttaagagaggggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagcgaaacaagtctcattcaaacc
atggggcgagccgctagaaacgctaatggtaaggttttattatacgctaaaaagatcact
caaagcatgcaaaaagcctttgagattacgagttacaggcgcgccaagcaagaagagttt
aataaaattcataatatcacccccaaaaccgttactcgcgctttagaagaggagttgaaa
ttaagagacgatgagattagaatcgctaaagccttaaaaaaggacaaaatccctaaaagt
gaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaatgcgcgaaaaatttg
gattttgaagaagcgatgcgtttgagagacgaaatcgctcaattaagaacgctttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (23)   

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